Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  350 bits (897), Expect = e-101
 Identities = 186/382 (48%), Positives = 246/382 (64%), Gaps = 4/382 (1%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F +L L+  +++ V + GY  PT IQ QAIP +L G DL+  AQTGTGKTA+F LP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  EKLRQGQTQRKK----RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
            KL   ++   K     +RAL+L PTRELA QV E V  YGK   L S  +FGGV    Q
Sbjct: 61  HKLSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
             +L  GVD+LVATPGRL+DL  Q  +   +++M++LDEADRMLDMGFI  + KI+  +P
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 177 SEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSH 236
            E Q LLFSAT S  +R+LA T +++P  I +     +   I+Q +  V +  K ALL+H
Sbjct: 181 KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 237 LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296
           +INE +W Q L+F  TK GA  +   L K GI A A H  +SQ+ R Q L  FKSG I+ 
Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300

Query: 297 LVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLC 356
           LVAT +AARGIDID+L  VVNY++P  +++YVHRIGRTGRA + GEA+SFV  D    + 
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ 360

Query: 357 MIESRLGHLIERRVVEGFEPKK 378
            IE      I  ++VEGF P++
Sbjct: 361 EIERFTKQTIPVQIVEGFGPEE 382