Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score =  311 bits (798), Expect = 2e-89
 Identities = 171/383 (44%), Positives = 245/383 (63%), Gaps = 6/383 (1%)

Query: 2   SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
           SFS L L++ L + VA++GY+  T IQ QAIPV+L G+D++ AAQTGTGKTA+F LP+L+
Sbjct: 4   SFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQ 63

Query: 62  KLRQGQ----TQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQK 117
           ++ + +    +  +  VRAL+L+PTRELA QVA++++ Y K T L+S  VFGG+D + Q 
Sbjct: 64  RMLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTNLRSTVVFGGIDMKPQT 123

Query: 118 QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
             L  GV+VLVATPGRL+D    +     ++E VVLDEADRMLD+GF+  + +I+  LP 
Sbjct: 124 LELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 183

Query: 178 EVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL 237
           +   LLFSAT S +++ LA + +++P  I +A    + S + Q   +V  D K   L  +
Sbjct: 184 QRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRALKQI 243

Query: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297
           + ++   QA +F+ +K G A+L   LE+ G+   A H  +SQ  R + L  FK+G++  L
Sbjct: 244 VRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLL 303

Query: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357
           V T VAARG+DI  +  V N+D+PF A++YVHRIGRTGRA A G A+SF S  N   L  
Sbjct: 304 VCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLVA 363

Query: 358 -IESRLGHLIERRVVEGFEPKKP 379
            IE  +   IE   VE FE  +P
Sbjct: 364 DIEKLIKKKIELEPVE-FEEDRP 385