Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  375 bits (963), Expect = e-108
 Identities = 200/389 (51%), Positives = 261/389 (67%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M F+ LGLS  +++ + + GY  P+ IQ QAIP +L G+D++AAAQTGTGKTA F LPIL
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           E L +G   R  +VRALIL PTRELA Q+ + V  YG+   LKS  VFGGV    Q QR+
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             G D+LVATPGRLMDLY Q AV F+++E++VLDEADRMLDMGFI  I+KI+  LP + Q
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSAT S ++RELAK  V +P EIS++   ++   + Q +   D   K  +L  L+ E
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
             W Q L+F+ TKHGA +L + L ++G+ A A H  +SQ  R + L DFK+G+++ LVAT
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            +AARGIDI QL +VVN++LP  A++YVHRIGRTGRA  VG+AIS VS      L  IE 
Sbjct: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360

Query: 361 RLGHLIERRVVEGFEPKKPVPISILNYVP 389
               L+ R  + GFEP   +P S L+  P
Sbjct: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRP 389