Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  300 bits (769), Expect = 5e-86
 Identities = 167/360 (46%), Positives = 229/360 (63%), Gaps = 1/360 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M F++LGLS+ +++ +    Y +PT IQ +AIPV+L+GRDL   AQTGTGKTA+F LP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 61  EKL-RQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           +   R  +    K  R L+L PTRELA Q+A+    YG+   L    VFGGV    Q + 
Sbjct: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  GVD++VATPGRL+DL  QRA   ++ E+ VLDEAD+M+DMGFI  + +I   LP + 
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q L FSAT+ +++  LA   + DP ++S+A    +   + Q L  V++  K ALL  ++ 
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
            ++ D+ALIF  TKHGA ++V  LE  GI A A H  +SQA R   L+ F+ G  K LVA
Sbjct: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T +AARGID+  +S V+N+++P   ++YVHRIGRT RA A G AISFV+ D    L  IE
Sbjct: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360