Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  290 bits (743), Expect = 5e-83
 Identities = 165/367 (44%), Positives = 226/367 (61%), Gaps = 1/367 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGLSD L++ V + GY  PT IQ QAIP +L  +D+I  AQTGTGKTASFVLP++
Sbjct: 1   MTFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           + L  G+  R    R+LIL PTRELA QVAE  E+YGK   L    + GGV    Q + L
Sbjct: 61  DILAHGRA-RALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKAL 119

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVDVL+ATPGRLMDL+ +  +      M+V+DEADRMLDMGFI  I +I   LP++ Q
Sbjct: 120 EKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQ 179

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSAT+   +++LA   + +P  I +A    + +NI+Q L+ VD   K   L  ++  
Sbjct: 180 TLLFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEA 239

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
           +    A+IF   K    +L   L++ G  +   H    QA R   LE F+ G +  LVA+
Sbjct: 240 EDVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVAS 299

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            VAARG+DI  +S V N+D P+  D+YVHRIGRTGRA A G A +FV+ ++ + +  I+ 
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQK 359

Query: 361 RLGHLIE 367
            +G  I+
Sbjct: 360 LIGTKID 366