Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  356 bits (914), Expect = e-103
 Identities = 186/384 (48%), Positives = 257/384 (66%), Gaps = 1/384 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F++LGL + L++T+ QL Y  PT +Q +AIP +L GRDL+AAAQTGTGKTA F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  EKLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           ++L  +G+      +RAL+LVPTRELA QV   V +Y ++  L + AV+GGV    Q  R
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  GVD+LVATPGRL+DL+ Q AV F +++ +VLDEADRMLD+GF E +  +   LP + 
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q LLFSAT S ++R LA  A+ DP  I ++   A+ +++ QWL+ VDK  K+ L  HL+ 
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           +Q+W Q L+F +T++G  +LV +L   G++A+  H  R QA R + L+ FK+ +++ LVA
Sbjct: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DID L  VVN DLP  A++YVHRIGRTGRA   GEAIS V  D  + L  IE
Sbjct: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360

Query: 360 SRLGHLIERRVVEGFEPKKPVPIS 383
                 + R     F P+  VP++
Sbjct: 361 VLTRQTLPRHEEPDFIPEHRVPMT 384