Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas lactucae CFBP13502

 Score =  340 bits (872), Expect = 5e-98
 Identities = 180/382 (47%), Positives = 246/382 (64%), Gaps = 1/382 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGL + L++ +  LGYQ PT +Q QAIP +L GRDL+AAAQTGTGKTA F LP+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  EKLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           + L  +G        RALIL PTRELA QV   V +Y +   L + AV+GGV    Q  +
Sbjct: 61  QLLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  GVD+LVATPGRL+DL+ Q A+   +++ +VLDEADRMLD+GF E +  I   LP + 
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q LLFSAT S  +R LA   + DP  I ++    + + + QW++ VDK  K+ L  HL+ 
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKAELFVHLMR 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           + +W Q L+F +T++G   LV +L+  GI+A+  H  + QA R + L+ FK+ +++ LVA
Sbjct: 241 KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DI+ L  VVN+DLP  A++Y+HRIGRTGRA   GEAIS V  D    L  IE
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE 360

Query: 360 SRLGHLIERRVVEGFEPKKPVP 381
                 + R + + FEP+  VP
Sbjct: 361 MLTRQTLTRNMEQDFEPEHRVP 382