Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas sp. DMC3

 Score =  350 bits (898), Expect = e-101
 Identities = 184/382 (48%), Positives = 252/382 (65%), Gaps = 1/382 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F+ LGL + L++++  LGYQ PT +Q QAIP +L GRDL+AAAQTGTGKTA F LP+L
Sbjct: 1   MTFASLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  EKLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119
           + L  +G        RALILVPTRELA QV E V QY ++  L++ AV+GGV    Q  +
Sbjct: 61  QLLAMEGPKVTANSARALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMK 120

Query: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179
           L  GVDVLVATPGRL+DL+ Q A+   +++ +VLDEADRMLD+GF E +  I   LP + 
Sbjct: 121 LRGGVDVLVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
           Q LLFSAT S  +R LA   + DP  + ++    + + + QW++TVDK  K+ L  HL+ 
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSVEVSPRNVAANTVKQWIVTVDKKRKAELFVHLMR 240

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           + +W Q L+F +T++G   LV +L+  G++A+  H  + QA R + L+ FK  +++ LVA
Sbjct: 241 KNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVA 300

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARG+DI+ L  VVN+DLP  A++Y+HRIGRTGRA A GEAIS V  D    L  IE
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNMLSAIE 360

Query: 360 SRLGHLIERRVVEGFEPKKPVP 381
                 ++R+    FEP+  VP
Sbjct: 361 MLTRQNLKRQNEPDFEPEHRVP 382