Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  342 bits (876), Expect = 2e-98
 Identities = 186/391 (47%), Positives = 244/391 (62%), Gaps = 7/391 (1%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M+F  L L+  +VQ V + GY+ PT IQ +AIP +L GRDL+  AQTGTGKTA+F LP+L
Sbjct: 15  MTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML 74

Query: 61  EKLRQGQTQRKK----RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
            +L   +  + +     +RAL+L PTRELA QV E V  YGK   L S  VFGGV    Q
Sbjct: 75  HRLANSERAKSRFGGVGIRALVLTPTRELAAQVEESVRVYGKHLSLTSTVVFGGVGMNPQ 134

Query: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
              +  GVD+LVATPGRL+DL  Q  +    ++M+VLDEADRMLDMGFI  + KI+  +P
Sbjct: 135 INAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILALVP 194

Query: 177 SEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSH 236
            E Q LLFSAT S ++R+LA   ++DP  I +     +   I+Q +  V +  K ALL H
Sbjct: 195 KEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKALLVH 254

Query: 237 LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296
           +IN+  W Q L+F  TK GA  +   L K GIHA A H  +SQ  R Q L  FKSG+I+ 
Sbjct: 255 IINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGEIRA 314

Query: 297 LVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLC 356
           LVAT +AARGIDID+L  VVNY++P  +++YVHRIGRTGRA   GEA++ VS D    + 
Sbjct: 315 LVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGNSGEAVNLVSLDEEGFMM 374

Query: 357 MIESRLGHLIERRVVEGFEP---KKPVPISI 384
            IE      I  ++   F P   +K  PI++
Sbjct: 375 EIERFTKQQIPVQIFPEFMPEPGEKAEPIAM 405