Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  367 bits (942), Expect = e-106
 Identities = 198/378 (52%), Positives = 252/378 (66%), Gaps = 2/378 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF  LGL+  +++ +A+ GY++PT IQ QAIP +L+GRDL+A+AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKR--VRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
           + L   Q   K R  VRALIL PTRELA Q+ E V  Y K   ++SL VFGGV    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
           +L  GVDVLVATPGRL+DL  Q AV  ++IE++VLDEADRMLDMGFI  I +++  LP++
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
            Q LLFSAT S  ++ LA+  +R+P EI +A    +   ++Q +  VDK  K  LLS +I
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
            +  W Q L+F  TKHGA  L  QL K GI + A H  +SQ  R + L DFKSG I+ LV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358
           AT +AARG+DI++L  VVNY+LP   ++YVHRIGRTGRA A GEA+S V  D  K L  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ESRLGHLIERRVVEGFEP 376
           E  L   I R    G+EP
Sbjct: 361 EKLLKKEIPRITTPGYEP 378