Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., ATP-dependent RNA helicase CsdA (EC 5.99.1.-) from Kangiella aquimarina DSM 16071

 Score =  270 bits (690), Expect = 8e-77
 Identities = 142/359 (39%), Positives = 224/359 (62%), Gaps = 5/359 (1%)

Query: 2   SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
           SF +LGLS  +++++ Q+GY++P+ IQ+ +IPV++ G+D+I  AQTGTGKTA+F LP+L 
Sbjct: 9   SFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMSGKDIIGQAQTGTGKTAAFALPMLS 68

Query: 62  KLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDT-GLKSLAVFGGVDEQAQKQRL 120
           KL      +    + L+L PTRELA+QVAE  + Y K+  G+  L ++GG     Q ++L
Sbjct: 69  KL----DAKDSNTQLLVLAPTRELAIQVAEACQSYAKNMPGMNVLPIYGGQRYDTQLRQL 124

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             G  ++V TPGR+MD   +  +  + ++ +VLDEAD ML MGFIE +  ++   P   Q
Sbjct: 125 KRGAQIVVGTPGRVMDHIRRGTLNLDNLKALVLDEADEMLRMGFIEDVEWVLGHTPDTRQ 184

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
             LFSAT+ ++++++A+  + +P  I I +  ++ + I Q    V    K   L+ ++  
Sbjct: 185 IALFSATMPKEIKKVAEKYLNEPEHIKIQSKTSTATTIDQRYWLVSGLHKLDALTRVLET 244

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
           +++D  +IF+ TK    +L  +L  RG  AEA +   +Q  R +++E  K G+   L+AT
Sbjct: 245 EEFDGMIIFVRTKIATIELADKLTARGFRAEALNGDIAQNARERIVEKLKKGQSDILIAT 304

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
            VAARG+D++++S VVNYD+P+  + YVHRIGRTGRA   G AI FV+    + L  IE
Sbjct: 305 DVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGHAILFVAHRERRMLKAIE 363