Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., ATP-dependent RNA helicase RhlE from Erwinia tracheiphila SCR3

 Score =  367 bits (942), Expect = e-106
 Identities = 197/378 (52%), Positives = 252/378 (66%), Gaps = 2/378 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF  LGL+  +++ V + GY +PT IQ QAIPV+L GRDL+A+AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNADILRAVTEQGYNQPTPIQLQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKR--VRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
           ++L   ++ +K R  VRALIL PTRELA QV E V+ Y K   L+SL VFGGV    Q  
Sbjct: 61  QRLSSTESNQKGRRPVRALILTPTRELAAQVGENVQDYSKYLNLRSLVVFGGVSINPQMM 120

Query: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
           +L  GVDVL+ATPGRL+DL  Q A+   ++E++VLDEADRMLDMGFI  I +++  LP++
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
            Q LLFSAT S +++ LA+  + +P ++ +A    +   ++Q +  VDK  K  LLS +I
Sbjct: 181 RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHFVDKKRKRELLSLMI 240

Query: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
               W Q L+F  TKHGA  L  QL K GI A A H  +SQ  R + L DFK  KI+ LV
Sbjct: 241 GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDSKIRVLV 300

Query: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358
           AT +AARGIDI +L  VVNY+LP   ++YVHRIGRTGRA A GEA+S V  D  K L  I
Sbjct: 301 ATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ESRLGHLIERRVVEGFEP 376
           E  L   I R  +EGFEP
Sbjct: 361 ERLLKREIPRIALEGFEP 378