Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  361 bits (926), Expect = e-104
 Identities = 195/377 (51%), Positives = 249/377 (66%), Gaps = 2/377 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF  LGL+  +++ +A+ GY +PT IQ QAIP +LQGRDL+A+AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  EKLRQGQTQRKKR--VRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
           E L + Q   K R  VRALIL PTRELA Q+ E V  Y +   ++SL VFGGV    Q  
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
           +L  GVDVL+ATPGRL+DL  Q AV  + IE++VLDEADRMLDMGFI  I +++  LP+ 
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
            Q LLFSAT S +++ LA+  + +P E+ +A    +   ++Q +  VDK  K  LLS +I
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
            +  W Q L+F  TKHGA  L  QL K GI + A H  +SQ  R + L DFKSG I+ LV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358
           AT +AARG+DI++L  VVNY+LP   ++YVHRIGRTGRA A GEA+S V  D  K L  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ESRLGHLIERRVVEGFE 375
           E  L   I R    G+E
Sbjct: 361 ERLLKKEIPRIETPGYE 377