Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  309 bits (791), Expect = 1e-88
 Identities = 154/361 (42%), Positives = 235/361 (65%), Gaps = 2/361 (0%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           M F  L +   +++ +   GY +PT IQ QAIP IL+GRD++  AQTGTGKTA+F +PI+
Sbjct: 1   MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII 60

Query: 61  EKLRQGQTQRKK--RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
           + + +     +   ++R+LI+ PTRELA+Q+ E +++Y K+T +    +FGGV + AQ  
Sbjct: 61  QHIHEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGAQVA 120

Query: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
           +L  GV +LVATPGRL+DL  Q  +  + I++ VLDEADRMLDMGFI  I K++  LP +
Sbjct: 121 QLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPKK 180

Query: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
            Q L FSAT+   + +L+K  + +P ++ +    ++   I Q++   +K +K +LL H++
Sbjct: 181 RQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIHIL 240

Query: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
            ++  DQ L+F  TKHGA ++V  L+K+ I A A H  ++Q  R ++L DFK  K++ LV
Sbjct: 241 EKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLV 300

Query: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMI 358
           AT +AARGIDID+L  V+N+D+P   + Y+HRIGR+GRA   G AIS    +   ++  I
Sbjct: 301 ATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVKAI 360

Query: 359 E 359
           E
Sbjct: 361 E 361