Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., ATP-dependent RNA helicase RhlE from Alteromonas macleodii MIT1002

 Score =  382 bits (980), Expect = e-110
 Identities = 201/393 (51%), Positives = 268/393 (68%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSF+QLGL++ L++ + + G+  P+ IQ +AIP +LQG+D++AAAQTGTGKTA F LPIL
Sbjct: 1   MSFTQLGLAEPLLRAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
           ++L +GQ      VRALIL PTRELA QV E +  + +   LK+  VFGGV    Q  +L
Sbjct: 61  QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             GVDVL+ATPGRL+DLY Q AV F ++E++VLDEADRMLDMGFI  I +++  LP E Q
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ 180

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240
            LLFSAT S ++  LAKT  R+P  IS A    +   + Q L+T+DK  K+  L  LI +
Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ 240

Query: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300
           Q+W+Q L+F  TKHGA ++  +L +  I + A H  +SQ  R + L DFK+G IK LVAT
Sbjct: 241 QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVAT 300

Query: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
            +AARGIDI +L  VVN DLP  A +YVHRIGRTGRA A G+A SFV  +  +NL  IE+
Sbjct: 301 DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET 360

Query: 361 RLGHLIERRVVEGFEPKKPVPISILNYVPKHKR 393
            +  L+ R  +EGFEP++ VP++ L+   K K+
Sbjct: 361 LIQKLLPRETLEGFEPQQAVPVTTLSKPKKPKK 393