Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  299 bits (766), Expect = 1e-85
 Identities = 167/369 (45%), Positives = 229/369 (62%), Gaps = 10/369 (2%)

Query: 2   SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
           SF++LGLS+ +V +V QLGY  PT IQ +AIP++L+GRDLI  AQTGTGKTA+F LPI+E
Sbjct: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74

Query: 62  KL-RQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
            L +Q      +  R LIL PTREL  Q+ + +  + K T L+   V GG     Q+ +L
Sbjct: 75  MLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQL 134

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
             G D+LVATPGRL+DL  + A+   ++  +VLDEAD+MLD+GFI  + KI   +P + Q
Sbjct: 135 EKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQ 194

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWL-ITVDKDTKSALLSHLIN 239
            LLFSAT+ + + ELA   + DP ++ +     +   + Q++     K+ K+ LL   +N
Sbjct: 195 TLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLN 254

Query: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
           E    ++++F+ TKHGA KL   LE  G    + H  +SQ  R + L+ FK G+IK LVA
Sbjct: 255 ENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVA 314

Query: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIE 359
           T VAARGIDI  ++ V NYDLP   D YVHRIGRT RA   G AI+F + D        E
Sbjct: 315 TDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPD--------E 366

Query: 360 SRLGHLIER 368
           +RL H IE+
Sbjct: 367 TRLLHDIEK 375