Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  277 bits (708), Expect = 6e-79
 Identities = 159/370 (42%), Positives = 225/370 (60%), Gaps = 5/370 (1%)

Query: 2   SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
           +FS LGLS  ++  +A  GY  PT IQ  AIP  L+ RD+   AQTGTGKTASFVLP+L 
Sbjct: 3   TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62

Query: 62  KLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 121
            L +G+  R +  R LIL PTRELA QVAE  E+YGK+  L    + GGV  + Q ++L 
Sbjct: 63  LLEKGRA-RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLE 121

Query: 122 DGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
            G DVL+ TPGRL+D   +  +    +E++V+DEADRMLDMGFI  I +I   +P   Q 
Sbjct: 122 RGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQT 181

Query: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV-DKD-TKSALLSHLI- 238
           L FSAT+  ++++LA   +++P  I +A   ++   ++Q ++   +KD  K A+L  L+ 
Sbjct: 182 LFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVR 241

Query: 239 -NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297
             E +   A+IF   K   A L   L++ G    A H    Q  R  +L++F+ G++  L
Sbjct: 242 AEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLL 301

Query: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357
           VA+ VAARG+DI  +S V N+D+P  A++YVHRIGRTGRA   G+A + V+K + K L  
Sbjct: 302 VASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDA 361

Query: 358 IESRLGHLIE 367
           IE  +   IE
Sbjct: 362 IEKLIAEKIE 371