Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (467), Expect = 7e-51
 Identities = 141/514 (27%), Positives = 236/514 (45%), Gaps = 123/514 (23%)

Query: 29  VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88
           V  ++ +LA +E +P G I  A+  F      + E ++G               ++A  W
Sbjct: 69  VQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGA--------------DFANLW 114

Query: 89  KSLAQGQAQR-----KMFH------RLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDV 137
           ++  Q   QR     K  H      +L +   +IWI+A   P++   G +  V+ +  D+
Sbjct: 115 RTHQQPSVQRLLQDAKKGHPVSAELQLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDI 174

Query: 138 TKAKITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCD 197
           T AK+    ++   ++++ + A+I+F  DGTI  AN+NFL+  GY+L+EI G+HH MF D
Sbjct: 175 TAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVD 234

Query: 198 DRF--YKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFAS 255
           +++   +E  +FW+ L  GEF    + R  + G+++W++A+YNPI +  G   +VVK+A+
Sbjct: 235 EQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYAT 294

Query: 256 DVTDQVLKAHATK---------------------EASQMAQQTSAETVRVAESGREMIDA 294
           +VT + +  +  K                     E +++ +  S   V + +   ++   
Sbjct: 295 NVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSV 354

Query: 295 AATIASGITESIAGANALMTDLSSQSQR-------------------------------- 322
           AATI    TE I+  N   TDLSS++++                                
Sbjct: 355 AATIKLAATE-ISNGN---TDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANIL 410

Query: 323 --------------ITQIVTTINKIAE-----------------QTNLLALNAAIEAARA 351
                         I Q+V T+  I E                 QTN+LALNAA+EAARA
Sbjct: 411 AGKATEIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARA 470

Query: 352 GEYGRGFAVVADEVRSLASNTSQATSEIDNI-------VKRNSQLTEQSGQTMEQIQAKV 404
           GE GRGF+VVA EVRSLA  ++ A  +I  +       +   ++L ++SG TM+ I   +
Sbjct: 471 GEQGRGFSVVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSI 530

Query: 405 TEFNHMLQQTQSLIEQIQHAAENVQKTVSNIVDE 438
              + ++    S   +       V + V N +DE
Sbjct: 531 KRVHDLMADIASASAEQATGINEVNQAV-NQMDE 563



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 264 AHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRI 323
           A  +  A++  +   +++V    +G E++D + +    I  SI   + LM D++S S   
Sbjct: 488 AQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQ 547

Query: 324 TQIVTTINKIAEQTN-LLALNAAI--EAARAGE 353
              +  +N+   Q + +   NAA+  EAA A E
Sbjct: 548 ATGINEVNQAVNQMDEMTQQNAALVEEAAAASE 580



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 139 KAKITADKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDD 198
           ++ +T     A    +    A+++  P+GTI  A++ F        E +VG         
Sbjct: 57  ESDLTPQVNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRT 116

Query: 199 RFYKENPNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVT 258
                     ++  +G   S    + +R  + +W++A   PI    G +  VV    D+T
Sbjct: 117 HQQPSVQRLLQDAKKGHPVSAEL-QLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDIT 175