Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

 Score =  115 bits (287), Expect = 4e-30
 Identities = 81/214 (37%), Positives = 106/214 (49%), Gaps = 33/214 (15%)

Query: 244 AGVVTQVVKFASDVTDQVLK-AHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGI 302
           A  + Q+      VT  V   AHA  +A Q+AQQ S   ++  +    M DA   I   +
Sbjct: 282 ATAIAQMAATIQQVTHNVQSTAHAASDADQLAQQGSELALKSLKDMGSMSDAVNDIGQAV 341

Query: 303 TESIAGANALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVA 362
                        L+ Q+Q I  +V  I  IAEQTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 342 NA-----------LAEQTQSIGSVVDVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVA 390

Query: 363 DEVRSLASNTSQATSEIDNIV--------------KRNSQLTEQSGQTMEQIQA------ 402
           DEVRSLA  T  +T EI +I+               R  Q++  S  ++E +QA      
Sbjct: 391 DEVRSLAQRTRASTEEIHHIIASLRAGAERAVSTASRGEQISRDSVHSVEAVQAALSGIA 450

Query: 403 -KVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNI 435
             V+    M QQ  +  EQ  H AE++ + +  I
Sbjct: 451 VAVSRITGMSQQMATASEQQSHVAEDINQQIVRI 484



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 22/282 (7%)

Query: 166 DGTIKEANENFLKATGYRLEEIVGKHHRMFCD-DRFYKENPNFWRELARGEFKSGLFHRR 224
           D  I   N+ F+  +G+  +E+VG+ H +    D       + W  + +G+   G+   R
Sbjct: 27  DSRITYCNDAFVAISGFTYDELVGQPHNLVRHPDMPPAVFGHMWETIKQGKPWMGIVKNR 86

Query: 225 TRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATKEASQMAQQTSAETVRV 284
            ++G   W+ A    I+    +       +    +Q+ +A A     +  +       R+
Sbjct: 87  AKNGDYYWVSAYVTAIYEQGRISGYESVRSVPTREQIRRAEALYARLRDGRSPVPWAARL 146

Query: 285 AES---GREMIDAAATIASGI--TESIAGANALMTDL--------SSQSQRITQIVTTIN 331
                 G  +I A    A+G       A    LM  L          Q+Q I + +    
Sbjct: 147 GHGLGHGWPLIGAGLLSAAGYLWLPPYAALAVLMASLLLAWYWVEHRQNQAIRRTLAEHP 206

Query: 332 KIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTS--QATSEIDNIVKRNSQL 389
           K A  + L+AL  +      G+     A++++E R   + T    A   + +   ++S L
Sbjct: 207 K-AFTSPLVALTYSDNPGLKGQL--DLAIISEEARLQTALTRLVDAGVGVKSRAAQSSDL 263

Query: 390 TEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKT 431
           ++   Q +++ +++  +    + Q  + I+Q+ H   NVQ T
Sbjct: 264 SDAQAQMLDRQRSETDQSATAIAQMAATIQQVTH---NVQST 302



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 42  DPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFWKSLAQGQAQRKMF 101
           D   +I   N  F++  G+T +E++GQ H +   P+   ++ +   W+++ QG+    + 
Sbjct: 25  DLDSRITYCNDAFVAISGFTYDELVGQPHNLVRHPDMPPAV-FGHMWETIKQGKPWMGIV 83

Query: 102 HRLKKDGSSIWIEA 115
               K+G   W+ A
Sbjct: 84  KNRAKNGDYYWVSA 97



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 17/102 (16%), Positives = 47/102 (46%)

Query: 268 KEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIV 327
           +  ++ A  T++   +++      ++A     SGI  +++    +   +++ S++ + + 
Sbjct: 415 RAGAERAVSTASRGEQISRDSVHSVEAVQAALSGIAVAVSRITGMSQQMATASEQQSHVA 474

Query: 328 TTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLA 369
             IN+   +   L   +A +A +  E  +    +A+ + SLA
Sbjct: 475 EDINQQIVRIAQLCDQSAGQARQGAEISQDLERMAEYLHSLA 516