Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., Chemotaxis regulator BdlA from Alteromonas macleodii MIT1002

 Score =  319 bits (817), Expect = 1e-91
 Identities = 174/408 (42%), Positives = 248/408 (60%), Gaps = 2/408 (0%)

Query: 29  VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88
           + A K  +AY  +   G+   A+ + LS + Y         H            +Y  FW
Sbjct: 26  LDAFKSTMAYAIYSTDGQCTFASPVLLSILDYPNSTATSFSHAAMRVEGVEPESQYKSFW 85

Query: 89  KSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQA 148
           + L  G +      R    G + W++A+Y+ V N+ G V ++  + HD+T+ +       
Sbjct: 86  QHLVNGGSFSDTVARKSALGETKWLKASYVAV-NKHG-VTEIHAIYHDITEHENAYFAGK 143

Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENPNFW 208
           AV  +L++S A+I+F+PDGTI  ANENF     Y L +I GKHHRMFC D+FY+ENPNFW
Sbjct: 144 AVTDALNKSMAVIEFHPDGTIITANENFTATVKYSLADIQGKHHRMFCRDKFYQENPNFW 203

Query: 209 RELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHATK 268
             LARG F SG F R   HG  LWLEATYNP+F+ +G V +V+KFAS++TD + + +A  
Sbjct: 204 DNLARGNFSSGQFERVDAHGNALWLEATYNPVFDASGRVVKVIKFASNITDAINEKNAIA 263

Query: 269 EASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQIVT 328
           +A+++A  T+ ET ++A  G   +  +  I +     +   N LM +LS QS +I  IVT
Sbjct: 264 QAAELAVSTAEETSQIAHEGASSLQRSVEIFNTAMLEVEQTNQLMHELSEQSLKIETIVT 323

Query: 329 TINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKRNSQ 388
           TI+ IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA  TS +T EI+++V  N +
Sbjct: 324 TISGIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAQRTSDSTVEIESVVAENRK 383

Query: 389 LTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIV 436
           L ++S + M  ++  V + +  + Q QS+I++IQ  A NV +TVS I+
Sbjct: 384 LADKSTKKMAGVKDSVDQNSQQIAQVQSIIDEIQKGALNVSETVSGIL 431



 Score = 90.5 bits (223), Expect = 9e-23
 Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 62/320 (19%)

Query: 28  IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQF 87
           +  AL +++A IEF P G I+ AN  F + + Y+  ++ G+HH++FC  +     E   F
Sbjct: 145 VTDALNKSMAVIEFHPDGTIITANENFTATVKYSLADIQGKHHRMFCRDKFYQ--ENPNF 202

Query: 88  WKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKA---KITA 144
           W +LA+G      F R+   G+++W+EATY PV + +G V KVIK A ++T A   K   
Sbjct: 203 WDNLARGNFSSGQFERVDAHGNALWLEATYNPVFDASGRVVKVIKFASNITDAINEKNAI 262

Query: 145 DKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKEN 204
            + A +  S    ++ I      +++ + E F  A                         
Sbjct: 263 AQAAELAVSTAEETSQIAHEGASSLQRSVEIFNTA------------------------- 297

Query: 205 PNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264
                 +   E  + L H  +   Q L +E     I   +G+  Q    A +   +  +A
Sbjct: 298 ------MLEVEQTNQLMHELSE--QSLKIETIVTTI---SGIAEQTNLLALNAAIEAARA 346

Query: 265 H--------ATKEASQMAQQTSAETVR---VAESGREMIDAAATIASGITESIAGANALM 313
                       E  Q+AQ+TS  TV    V    R++ D +    +G+ +S+       
Sbjct: 347 GDQGRGFAVVADEVRQLAQRTSDSTVEIESVVAENRKLADKSTKKMAGVKDSV------- 399

Query: 314 TDLSSQSQRITQIVTTINKI 333
                 SQ+I Q+ + I++I
Sbjct: 400 ---DQNSQQIAQVQSIIDEI 416