Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  255 bits (651), Expect = 3e-72
 Identities = 164/498 (32%), Positives = 244/498 (48%), Gaps = 92/498 (18%)

Query: 28  IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQF 87
           +++AL ++ A IEFD  G+IL AN  F  A+GY   E+IG+HH +F +P  V S +Y  F
Sbjct: 13  VLAALSKSQAMIEFDLSGRILTANDNFCRALGYELSEIIGKHHSMFVEPAFVKSADYKAF 72

Query: 88  WKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQ 147
           W  LA G   ++ + R+ K G  +WIEA+Y PV  R G   KV+K+A D+T  K+   + 
Sbjct: 73  WAKLAAGNFDQQQYKRIGKGGKEVWIEASYNPVMRR-GKPVKVVKIATDITAQKLKVAED 131

Query: 148 AAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENP-- 205
           A    +L R+ A+I+F P G +  ANENFL A GY L EI GKHH MFC+   Y  +P  
Sbjct: 132 AGKIEALSRAQAIIEFTPTGDVLTANENFLSALGYSLSEIQGKHHSMFCEPS-YTASPDY 190

Query: 206 -NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264
            NFW+ LA G+  +  F R  + G+ ++++A+YNPIF+  G V +VVKFA+DVT +V   
Sbjct: 191 RNFWKMLAGGDLMADEFMRLGKGGRKVFIQASYNPIFDMNGRVFKVVKFATDVTTRVENV 250

Query: 265 ----------------------------------HATKEASQMAQQTSAETVRVAESGRE 290
                                             +A  +  + A  T A+  R   +G  
Sbjct: 251 EQLAGCLNSLADGDLAQQIEKPFIPSLERLRTDFNAASDKLKRAMATVADNARAISAGSS 310

Query: 291 MIDAAA--------TIASGITESIAGANALMTDLSSQSQR-------------------- 322
            I  AA          A+ + E+ A    + T +   S+R                    
Sbjct: 311 EIRTAADELAKRTEQQAASVEETAAALEEITTTVKDSSRRAEEAGQLVARTREHAEHSGE 370

Query: 323 ------------------ITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADE 364
                             I+ I+  I++IA QTN LALNA +EAARAGE G+GFAVVA E
Sbjct: 371 VVRDAIGAMDQIETSSREISNIIGVIDEIAFQTNHLALNAGVEAARAGEAGKGFAVVAQE 430

Query: 365 VRSLASNTSQATSEIDNI-------VKRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSL 417
           VR LA  +++A  EI  +       V+    L  ++G  +++I  +V + N  +      
Sbjct: 431 VRELAQRSAKAAKEIKTLITSSGSQVQSGVSLVTKAGSALQEIATQVHDINTNVVAIVEA 490

Query: 418 IEQIQHAAENVQKTVSNI 435
             +  +A   + K V+++
Sbjct: 491 AREQSNALGEINKAVNSV 508



 Score =  101 bits (251), Expect = 7e-26
 Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 5/136 (3%)

Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYK--ENPN 206
           AV  +L +S AMI+F+  G I  AN+NF +A GY L EI+GKHH MF +  F K  +   
Sbjct: 12  AVLAALSKSQAMIEFDLSGRILTANDNFCRALGYELSEIIGKHHSMFVEPAFVKSADYKA 71

Query: 207 FWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAHA 266
           FW +LA G F    + R  + G+++W+EA+YNP+    G   +VVK A+D+T Q LK   
Sbjct: 72  FWAKLAAGNFDQQQYKRIGKGGKEVWIEASYNPVMR-RGKPVKVVKIATDITAQKLK--V 128

Query: 267 TKEASQMAQQTSAETV 282
            ++A ++   + A+ +
Sbjct: 129 AEDAGKIEALSRAQAI 144