Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., sensory methylation accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  223 bits (569), Expect = 9e-63
 Identities = 137/415 (33%), Positives = 223/415 (53%), Gaps = 29/415 (6%)

Query: 26  SDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYA 85
           S ++ AL R+ A IEFD  GKIL AN  F  A+GY   E++G+ H IF   E   S EY 
Sbjct: 12  SAVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVGRTHSIFLSSEDAASPEYK 71

Query: 86  QFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITAD 145
            FW  L++G+  +  + R  K+G  IWIEA+Y PV  R G  YKV+K+A D+T  K  + 
Sbjct: 72  AFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPV-FRFGKPYKVVKIATDITVIKRKSA 130

Query: 146 KQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENP 205
           +      +L R+ AMI+F PDG I  ANENFL    Y  EEI+GKHH +FC+  + +   
Sbjct: 131 EDDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIFCEPAYAQSQD 190

Query: 206 --NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLK 263
             +FW+EL RG F +G F R  +  + ++++A+YNPI +D G V +VVKFA DVTD+V  
Sbjct: 191 YRDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKFAFDVTDRV-- 248

Query: 264 AHATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRI 323
            HA +E     ++ S   +RV    +  +     +     +SIA     + ++  Q+  +
Sbjct: 249 -HAVEELGAALERLSQCNIRVT-LDKPFVGEFERLRQDFNKSIAEFQKTLENVLGQTGDL 306

Query: 324 TQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIV 383
           T       + +++ +  ++N A       E  R  AV  +E       TS A  EI   V
Sbjct: 307 T-------RSSQEVSEASVNLA-------ERSREQAVALEE-------TSAALEEITATV 345

Query: 384 KRNSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNIVDE 438
           + +++  +++ + ++  +A       ++++T   +++I+ A+  + + +  ++DE
Sbjct: 346 RSSTENMKETRKLVQSARASTVASTEVVERTVDAMQRIETASREISQII-GVIDE 399



 Score =  180 bits (457), Expect = 9e-50
 Identities = 126/418 (30%), Positives = 195/418 (46%), Gaps = 47/418 (11%)

Query: 25  DSDIVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEY 84
           D   ++AL R  A IEF P GKIL AN  FL+ + YT EE+IG+HH IFC+P    S +Y
Sbjct: 132 DDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSIFCEPAYAQSQDY 191

Query: 85  AQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITA 144
             FWK L +G      F RL KD   ++I+A+Y P+ +  G V+KV+K A DVT      
Sbjct: 192 RDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVKFAFDVTDRVHAV 251

Query: 145 DKQAAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKEN 204
           ++  A    L + +  +  +                    +  VG+  R+  D  F K  
Sbjct: 252 EELGAALERLSQCNIRVTLD--------------------KPFVGEFERLRQD--FNKSI 289

Query: 205 PNFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264
             F + L   E   G     TR  Q++  EA+ N               A    +Q +  
Sbjct: 290 AEFQKTL---ENVLGQTGDLTRSSQEV-SEASVN--------------LAERSREQAVAL 331

Query: 265 HATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRIT 324
             T  A +    T   +    +  R+++ +A       TE +      M  + + S+ I+
Sbjct: 332 EETSAALEEITATVRSSTENMKETRKLVQSARASTVASTEVVERTVDAMQRIETASREIS 391

Query: 325 QIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVK 384
           QI+  I++IA QTNLLALNA +EAARAG+ G+GFAVVA EVR LA  ++ A  EI  ++ 
Sbjct: 392 QIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSASAAKEIKALIN 451

Query: 385 RNS-------QLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENVQKTVSNI 435
            +        +L  ++G+ ++QI + V   +  +       ++       + K V+ +
Sbjct: 452 NSGTEVLEGVRLVGETGEALKQIDSLVRHIDGNVDTISKAADEQAAGISEINKAVNRL 509