Pairwise Alignments

Query, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  258 bits (659), Expect = 4e-73
 Identities = 168/501 (33%), Positives = 254/501 (50%), Gaps = 93/501 (18%)

Query: 28  IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQF 87
           +++AL ++ A IEFD  GKIL AN  F  A+GY   E++G+HH +F +P  V+S +Y  F
Sbjct: 13  VLAALSKSQAIIEFDLSGKILTANESFCRAIGYELAEIVGRHHSLFVEPSVVSSPDYKAF 72

Query: 88  WKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQ 147
           W  LA GQ  ++ + R+ K G  +WIEA+Y PV  R G   KV+K+A D+T+ K+ A + 
Sbjct: 73  WSKLASGQFDQRQYKRIGKGGREVWIEASYNPVFRR-GRPVKVVKIATDITERKLRAAED 131

Query: 148 AAVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYK--ENP 205
           A    +L R+ A+I+F+P+G +  AN+NFL A GY L E+ G+HH MFCD  + +  E  
Sbjct: 132 AGKIDALSRAQAIIEFSPEGEVLTANDNFLAALGYSLSEVQGRHHSMFCDPAYTQSSEYK 191

Query: 206 NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA- 264
            FW+ LA G+  +  F R  + G+ ++++A+YNPIF+  G V +VVKFA+DVT +V    
Sbjct: 192 QFWQRLAGGDLVADEFMRLGKGGRKVFIQASYNPIFDMNGKVFKVVKFATDVTGRVENVE 251

Query: 265 ---------------------------------HATKEASQMAQQTSAETVRVAESGREM 291
                                            +A  E  + A    +E      SG   
Sbjct: 252 TLAQCLNDLAEGDLAQSIDKPFIPSLERLRTDFNAASEKLKRAMTLVSENAGAISSGSNE 311

Query: 292 IDAAA--------TIASGITESIAGANALMTDLSSQSQR--------------------- 322
           I +AA          A+ I E+ A    + T ++  S+R                     
Sbjct: 312 IRSAADDLAKRTEQQAASIEETAAALEEITTAVNDSSRRADEAGKIVARARDHAEHSGQV 371

Query: 323 -----------------ITQIVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEV 365
                            I+ I+  I++IA QTNLLALNA +EAARAGE G+GFAVVA EV
Sbjct: 372 VRDAISAMDQIEKSSREISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEV 431

Query: 366 RSLASNTSQATSEIDNIVKRNSQ-------LTEQSGQTMEQIQAKVTEFN-HMLQQTQSL 417
           R LA  ++ A  EI +++  +         L  ++G  +++I  +V + N +++   ++ 
Sbjct: 432 RELAQRSATAAKEIKSLINASGAQVENGVGLVTRAGSALQEIAEQVRDINTNVVAIVEAA 491

Query: 418 IEQIQHAAENVQKTVSNIVDE 438
            EQ    AE  Q    N VD+
Sbjct: 492 REQSTALAEINQAV--NTVDQ 510



 Score = 94.7 bits (234), Expect = 7e-24
 Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYK--ENPN 206
           AV  +L +S A+I+F+  G I  ANE+F +A GY L EIVG+HH +F +       +   
Sbjct: 12  AVLAALSKSQAIIEFDLSGKILTANESFCRAIGYELAEIVGRHHSLFVEPSVVSSPDYKA 71

Query: 207 FWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKA 264
           FW +LA G+F    + R  + G+++W+EA+YNP+F   G   +VVK A+D+T++ L+A
Sbjct: 72  FWSKLASGQFDQRQYKRIGKGGREVWIEASYNPVFR-RGRPVKVVKIATDITERKLRA 128