Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  232 bits (591), Expect = 3e-65
 Identities = 164/559 (29%), Positives = 284/559 (50%), Gaps = 28/559 (5%)

Query: 6   NLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTVHQLE 65
           N++I  +       + AL L +  +++ +M ++    E I   ++P  + + + T   L 
Sbjct: 5   NMNIAPRAFLGFAFIGALMLFLGVFALNQMSKIRGATEDITMSSVPSIRALDEFTQLTLR 64

Query: 66  GAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSI 125
             +   R+             ++ + Q + +E      Q+   ++ + E  IE +   + 
Sbjct: 65  LRVLSYRLLT----------NREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESSEERAA 114

Query: 126 RSYLANLEQDLDSLGREHEEFERKLN----ELLNELRSGREVKLLVADAEQIEQLQISLD 181
                 L      LG+ H+  ER  +      + ELRS    +LL +++EQ+  +     
Sbjct: 115 YDDYVRL------LGQYHQIEERMKSLSRANQVEELRSLLNNELL-SNSEQVNAVLT--- 164

Query: 182 QRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIAR 241
            RL+DI  K+  AT +     E +   A   ++ L   A L  L+  +  ++ I + IA+
Sbjct: 165 -RLLDINNKMALATNKDA---EDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQ 220

Query: 242 ARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQL 301
           A + A E+AEGN ++  KV   DE G+L+ +M  M   L   +  +   A  +AS   +L
Sbjct: 221 ALEAAEEVAEGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEEL 280

Query: 302 ASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVL 361
            +  + + + + QQ    EQ  +A+ +M   + EVA +A  +S A+  A  +A    D++
Sbjct: 281 NAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLV 340

Query: 362 GKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAG 421
            +T +   ++  + Q +  +I +L   +R I   + V+ G+++QTNLLALNAAIEAARAG
Sbjct: 341 QETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAG 400

Query: 422 EQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSIT 481
           E GRGFAVVADEVRALA R+QQ+T EI+ +I ++    + A   + +S  + E + +   
Sbjct: 401 EAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAK 460

Query: 482 AAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQ 541
            A   LD+IN A++E+   N  +A+A+EEQ+  A E+  N+ +IRD        A +T+ 
Sbjct: 461 GAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSA 520

Query: 542 ASEELAQQAQGLKLLMGRF 560
           AS EL++ A  L  ++GRF
Sbjct: 521 ASSELSRLAVDLNGMVGRF 539