Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 655 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  245 bits (625), Expect = 4e-69
 Identities = 170/499 (34%), Positives = 264/499 (52%), Gaps = 20/499 (4%)

Query: 76  AAGIESSQGKQ---------QQNQYQAQLMELVNKFKQEFNQSRQLLESSIEHTISPSIR 126
           A G++ SQGK+         Q +Q    +++ +N+     NQSR++ E + E        
Sbjct: 161 AYGLKESQGKEGAEFIEQAGQVSQVSRLMLQAMNEAHVRLNQSRKVDEDTSEQGKIEQAD 220

Query: 127 SYLANLEQDLDSLGREHEEFERKLNELLNELRS-----GREVKLLVADAEQIEQLQISLD 181
             LA +EQ   S+  +   ++  LNE+   + +     G    LL  +    +QL    D
Sbjct: 221 QALAQVEQLKTSV--KDSGYQTVLNEVAGHIAAFSEKLGEYTGLLAQEKVVYKQLHDRAD 278

Query: 182 QRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLILGFAFSKQIVMAIAR 241
           Q    ++ ++ QA        + + +++   ++  SA A+L GLI  +  ++ IV  +  
Sbjct: 279 Q----VVSRVNQAYGAEDQSMQAQLKKSSMLILGSSALALLVGLIAAWVITRLIVAPLRS 334

Query: 242 ARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQL 301
              +A ++A G+ S R +V   DEIGQL+ +M  M   LS +V  +      +AS+   L
Sbjct: 335 VIAVAQQIAAGDLSGRMEVNRRDEIGQLMQAMQQMGNGLSQMVSGLQAGIEQLASSAHSL 394

Query: 302 ASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARYSCDVL 361
           +S  E     V  Q+  TEQV +AM QM  T+ +VA +AEE++ A   A E       V+
Sbjct: 395 SSVTEQTNVEVSSQKEETEQVATAMNQMTATVHDVARNAEEAAQAAQTADEKVDSGQRVV 454

Query: 362 GKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIEAARAG 421
            ++      L  ++  +   I  L A  + I S + V++ ++EQTNLLALNAAIEAARAG
Sbjct: 455 RQSLQRIELLATSSSSASASIESLSAEIQHIGSVLSVIKSVAEQTNLLALNAAIEAARAG 514

Query: 422 EQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEESFSSIT 481
           EQGRGFAVVADEVRALA R+Q +T EI+ L+ TL   AQS+ + I  S   ++ + S   
Sbjct: 515 EQGRGFAVVADEVRALAKRTQHSTEEIERLVSTLRSAAQSSVQQIQQSGELVKLAVSDAL 574

Query: 482 AAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQ 541
             +  L SI +A+  +   N Q+AAA+EEQS  A+EI+ ++T IR + +   LS Q  A 
Sbjct: 575 ETESALGSIAVAVSLIQQMNQQIAAAAEEQSSVAEEINRSVTSIRASADQSALSMQGNAA 634

Query: 542 ASEELAQQAQGLKLLMGRF 560
           +S +LAQ    LK ++G F
Sbjct: 635 SSIQLAQLGAELKGMVGHF 653