Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  192 bits (487), Expect = 4e-53
 Identities = 112/324 (34%), Positives = 178/324 (54%), Gaps = 2/324 (0%)

Query: 239 IARARKLANEMAEGN--FSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVIDRANTIAS 296
           ++R   L   +++GN   ++R  V + DEIGQ+  S+N   + L  +  +V D +  I  
Sbjct: 252 LSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDR 311

Query: 297 TVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESSAATARAQENARY 356
            V  L++ A SN  ++ Q    TEQ  +A+ +M+ +   +A SA++++  T R    A  
Sbjct: 312 AVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADE 371

Query: 357 SCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISEQTNLLALNAAIE 416
           S   + +     + LV       + I  +   T+QI S + V+  I+EQTNLLALNAAIE
Sbjct: 372 SKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIE 431

Query: 417 AARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATKMIDSSDRQIEES 476
           AARAGEQGRGFAVVADEVRALASR+QQ+T +I  ++ TL    ++  K +DS+    EE+
Sbjct: 432 AARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEET 491

Query: 477 FSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIMLSA 536
                     L+ +  ++ E+ + NT +A ++ EQ     E+S NM  I++    + ++A
Sbjct: 492 AERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNA 551

Query: 537 QETAQASEELAQQAQGLKLLMGRF 560
            +    S EL   +  L  ++GRF
Sbjct: 552 AQVTSVSNELQNTSHALSDVVGRF 575



 Score = 25.0 bits (53), Expect = 0.008
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 7  LSITQKMIALVGCLLALTLMVSTYSI 32
          LS   K+IAL+  +++LT++ S +S+
Sbjct: 4  LSFKNKIIALIIAIISLTIITSYFSV 29