Pairwise Alignments

Query, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  194 bits (493), Expect = 7e-54
 Identities = 163/582 (28%), Positives = 276/582 (47%), Gaps = 63/582 (10%)

Query: 3   WFNNLSITQKMIALVGCLLALTLMVSTYSITKMKRVAVEIEAIAHDNLPLAKLMTDMTVH 62
           +  NLSI +K+ A    +  ++L  + Y I+++ ++  E+     D LP           
Sbjct: 2   FLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLP----------- 50

Query: 63  QLEGAITLERVFRAAGIESSQGKQQQNQYQAQLMELVNKFKQEFNQSRQLLESS--IEHT 120
                           +E+    + +  Y  +    V   K E  Q RQ +E +  ++  
Sbjct: 51  ---------------AMENVDAIKDKMSYWRRTQFAVLPMKDEA-QIRQTIERNNRVQAE 94

Query: 121 ISPSIRSYLANLEQDLDSLGREHEEFER-------------KLNELLNELRSGREVKLLV 167
           I+ S+ +Y   +       G E + F+R             + N+ L    +     +L 
Sbjct: 95  INDSLVAYGKTVWP-----GEEEQTFKRLMGNWNAYTAVTDQFNQTLLTQGADDAYPILA 149

Query: 168 ADAEQIEQLQISLDQRLIDILRKIEQATEQSVLVTEQEEREALWGMIYLSAFAILFGLIL 227
                 E L+      LI IL +   + +  +L + +     L      S  AIL  ++L
Sbjct: 150 NSLSTFEALESDFTL-LIGILHQAMDSNKVQILSSVK----TLNSTSVASNIAILAIMVL 204

Query: 228 -GFAFSKQIVMAIARARKLANEMAEGNFSKRAKVTT--GDEIGQLITSMNTMAQSLSHIV 284
             +  ++ I   +A   K +N +A+G+ S+    ++   DE+G L  +   M Q+L  ++
Sbjct: 205 MTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLI 264

Query: 285 GEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVASSAEESS 344
            E+I     ++S V ++   +  +   +++QQ    QV +AMAQM   + +VA + E+S+
Sbjct: 265 DEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSA 324

Query: 345 ----AATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVE 400
               AA  ++QE AR +  ++   + V+  +     ++ Q + ELE  + QI   V V+ 
Sbjct: 325 SQAMAANHKSQEGARENASMVRSIQQVADII----GEAGQTVSELEQQSSQINVVVDVIR 380

Query: 401 GISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQ 460
            I++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA R+Q +T EI  +I+ L   A+
Sbjct: 381 SIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAK 440

Query: 461 SATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISH 520
            A    + S   I++       ++  + SI  ++  +    TQ+A+A  EQ   ADE+S 
Sbjct: 441 QAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASACSEQDSVADELSR 500

Query: 521 NMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGRFVI 562
           N+ +I  A + +   +Q+TAQA  EL Q A  L+  + RF I
Sbjct: 501 NVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542