Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  126 bits (317), Expect = 3e-33
 Identities = 136/618 (22%), Positives = 266/618 (43%), Gaps = 82/618 (13%)

Query: 59  LAGLEESSSAMTQLRS-SMEQIAVGAEESSSATKQS--ETAVSQMNNFIN-----EQATY 110
           ++ + + ++++T+LR   ++ +    +E+ +   Q+  +   +Q    I+     E    
Sbjct: 46  MSDITQLNASLTKLRIVRLQYMLANGDEAVAQNVQTNLDAFAAQQQKLIDSFKSPENLKL 105

Query: 111 ATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQV 170
             + K I+T  +Q +    NK+ E   N   S +   D        + Q   +  +VKQ+
Sbjct: 106 LNEQKSIITAYQQSL----NKMREAYRNGNASRQVMGDKADIA---NAQINALETSVKQM 158

Query: 171 I----HIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDI 226
                H+A    +       +  R    G    V  +T    A + EK  A ++ L    
Sbjct: 159 PDSSEHLAQFQAVADAKMQFQLARYEVRGYTGNVSPETEARAAAQIEKAIAGLKDLNATF 218

Query: 227 SNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMV----DLVKDS----EVLLKA 278
               +     ++++     S VQ     N  +   R EM     D+V  S    E+ L  
Sbjct: 219 GASQQSALTALETALGAYRSAVQNYKAANANIVTARAEMTTQGADIVTISDKLYEIQLTR 278

Query: 279 ADEMSSAA----------------VIALKGSESVSQAAQEQSAACEE----------SLK 312
            D  S+ A                + AL  +  +++  QE  A  E            + 
Sbjct: 279 RDAESAQARSLQLISTLLALLVGVIAALVITRQITRPIQETLAVVERIASGDLSHNIQVT 338

Query: 313 SLDQQQIALDGAVTAAQSLDELTDELRTS-TDIVKSSEEVAAAAEELSAGIEEINRSSNE 371
             D+  +   G      +L EL   +R   T I  ++EE++A  E+ SAG+      +++
Sbjct: 339 RRDELGVLQQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQ 398

Query: 372 IMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTT 431
           +  A++++++  Q +A++ E            A L    A+   +A +K+   + E    
Sbjct: 399 VATAMHEMTATVQEVARNAEQ-----------ASLAAADADGQARAGDKV---VAEAIAQ 444

Query: 432 VDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARA 491
           ++ +   +  ST A       M ++++ S +I  ++D I  V+ QT +LA+N A+EAARA
Sbjct: 445 IERLAAEVARSTDA-------MTHLQQESNKIGSVMDVIKAVAEQTNLLALNAAIEAARA 497

Query: 492 GEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQINIVRKDLADILSTVMEEA 548
           GE G+GFAVV+ +++ LA    ++ E+I+  V  +Q   +Q+  V  +   +  + +E  
Sbjct: 498 GEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVANVMNNSRSLTDSSVELT 557

Query: 549 QKAALTIKQL----DNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESS 604
           +KA ++++ +     N++S    +   +++ S  A  I RSI + R   +Q ATA++E++
Sbjct: 558 RKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSIVNVRDVSEQTATASDETA 617

Query: 605 HATGEAATAARQQSSSTS 622
            ++ E A    Q     S
Sbjct: 618 KSSVELARLGSQLQQMVS 635



 Score =  126 bits (317), Expect = 3e-33
 Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 4/273 (1%)

Query: 45  QQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQM 100
           QQ  +R+ +   EL++G+ +     +SA  +L +  EQ + G       T Q  TA+ +M
Sbjct: 347 QQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQVATAMHEM 406

Query: 101 NNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQA 160
              + E A  A Q+       +         + E ++ ++  +     S   M  L +++
Sbjct: 407 TATVQEVARNAEQASLAAADADGQARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQES 466

Query: 161 AKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIE 220
            KI   +  +  +A+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA++ +K+   IE
Sbjct: 467 NKIGSVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIE 526

Query: 221 SLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAAD 280
            L+  + NG + V+N + +S    +S V+        L  I   + ++   ++ +  AA+
Sbjct: 527 GLVAGLQNGTQQVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAE 586

Query: 281 EMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
           + S+ A    +   +V   +++ + A +E+ KS
Sbjct: 587 QQSAVAEEISRSIVNVRDVSEQTATASDETAKS 619



 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 81/376 (21%), Positives = 158/376 (42%), Gaps = 62/376 (16%)

Query: 292 GSESVSQ---------AAQEQ----SAACEESLKSLDQQQIALDGAVTA-AQSLDELTDE 337
           G E+V+Q         AAQ+Q    S    E+LK L++Q+      +TA  QSL+++ + 
Sbjct: 71  GDEAVAQNVQTNLDAFAAQQQKLIDSFKSPENLKLLNEQK----SIITAYQQSLNKMREA 126

Query: 338 LRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITS- 396
            R       +S +V     +++      N   N +  ++ Q+   ++H+A+         
Sbjct: 127 YRNGN----ASRQVMGDKADIA------NAQINALETSVKQMPDSSEHLAQFQAVADAKM 176

Query: 397 ---LTQIEQGARLGKERAESSLKAC---EKMLTGIEENKTTV---DEMILAITEST---- 443
              L + E     G    E+  +A    EK + G+++   T     +  L   E+     
Sbjct: 177 QFQLARYEVRGYTGNVSPETEARAAAQIEKAIAGLKDLNATFGASQQSALTALETALGAY 236

Query: 444 KAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVST 503
           ++A +N  + AN   ++ + +    G   V+I   +  +      A + +  +   ++ST
Sbjct: 237 RSAVQNY-KAANANIVTARAEMTTQGADIVTISDKLYEIQLTRRDAESAQ-ARSLQLIST 294

Query: 504 DIQNLANDAAENAEQIKDQV-KNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVR 562
            +  L    A  A  I  Q+ + IQE + +V +  +  LS  ++  ++  L + Q     
Sbjct: 295 LLALLVGVIA--ALVITRQITRPIQETLAVVERIASGDLSHNIQVTRRDELGVLQQ---- 348

Query: 563 SRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTS 622
                   G +R+  +   +   I+  R G+ QIA+AAEE S  T + +     Q   T 
Sbjct: 349 --------GIQRMGTT---LRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETD 397

Query: 623 ELASAIENIAAVADEL 638
           ++A+A+  + A   E+
Sbjct: 398 QVATAMHEMTATVQEV 413



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 17/101 (16%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 38  ARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAV 97
           A  +   +   +     T +    LE  +  ++ ++S  +QIA  AE+ S+  ++   ++
Sbjct: 540 ANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSI 599

Query: 98  SQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSN 138
             + +   + AT + ++     K   ++  + +++ +MVS+
Sbjct: 600 VNVRDVSEQTATASDET----AKSSVELARLGSQLQQMVSH 636