Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  124 bits (310), Expect = 1e-32
 Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 18/298 (6%)

Query: 26  APKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEE 85
           A  K  D LR    TL R   +A ++ASA  EL A  +ES+  +TQ  + +EQ A     
Sbjct: 251 AMAKMQDKLRD---TLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAA----- 302

Query: 86  SSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSER 145
                    TAV++M + + E A  A  + +          D  + + E VS ++  S  
Sbjct: 303 ---------TAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGD 353

Query: 146 QNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTV 205
              +   + +L+ ++  I   +  +  +ADQTNLLALNAAIEA RAG+ G+GFAVVAD V
Sbjct: 354 VQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEV 413

Query: 206 RTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEM 265
           R LA + +++ + IE +I  I  G E   + +++S+++AES +         L  I   +
Sbjct: 414 RALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAI 473

Query: 266 VDLVKDSEVLLKAADEMSSAAVIALKGSESVSQ-AAQEQSAACEESLKSLDQQQIALD 322
           V++ + + V+  AA+E +  A    +   ++   + Q  + A + S  S +  ++A+D
Sbjct: 474 VEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVD 531



 Score =  100 bits (248), Expect = 2e-25
 Identities = 98/449 (21%), Positives = 208/449 (46%), Gaps = 65/449 (14%)

Query: 199 AVVADTVRTLAEKAEKNAANIESLIKDISNGAE------MVSNGVKSSSQKAESEVQKGH 252
           A   D VR L +  +     IE  +K +S   +      +++N + S+S++  + + +  
Sbjct: 113 AAYDDYVRLLGQYHQ-----IEERMKSLSRANQVEELRSLLNNELLSNSEQVNAVLTRLL 167

Query: 253 VVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVI---------ALKGSESVSQAAQEQ 303
            +N ++ L  N      KD+E     A  M  + ++         A   + S++    + 
Sbjct: 168 DINNKMALATN------KDAEDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQA 221

Query: 304 SAACEESLKSLDQQQIALDGAVTAAQSL-------DELTDELR----TSTDIVKSSEEVA 352
             A EE  +    + I +DG+  A + L       D+L D L+    ++T +  ++EE+ 
Sbjct: 222 LEAAEEVAEGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELN 281

Query: 353 AAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAE 412
           A  +E + G+ + N    +   A+N+++S  + +A++  +   +       A  G++  +
Sbjct: 282 AVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQ 341

Query: 413 SSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISN 472
            ++ A E+M   ++   T + ++               NE       SR I K++D I  
Sbjct: 342 ETVSAIERMSGDVQATATLIGDLA--------------NE-------SRDIGKVLDVIRG 380

Query: 473 VSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQ 529
           ++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA+   ++  +I+  + +IQ   E 
Sbjct: 381 LADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEH 440

Query: 530 INIVRKDLADILSTVMEEAQKAALTIKQLD----NVRSRMSDVVLGSKRISESAGGIERS 585
                ++  +   + +  A+ A +++  ++     +  R   +   ++  ++ A  ++R+
Sbjct: 441 AVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRN 500

Query: 586 IADARAGMQQIATAAEESSHATGEAATAA 614
           + + R    Q AT A ++S A+ E +  A
Sbjct: 501 LVNIRDLSVQSATGASQTSAASSELSRLA 529



 Score = 32.3 bits (72), Expect = 6e-05
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 595 QIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           Q+A+AAEE +  T E+A    QQ++   + A+A+  + +  +E+
Sbjct: 272 QLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEV 315