Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417
Score = 114 bits (284), Expect = 1e-29
Identities = 81/282 (28%), Positives = 146/282 (51%), Gaps = 13/282 (4%)
Query: 46 QAAERVASATAEL---LAGLEESSS----AMTQLRSSMEQIAVGAEESSSATKQSETAVS 98
Q +A+ A+L L G+ ES+ A ++ S MEQ + + +Q+ TAV+
Sbjct: 247 QLLTALATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQAQNDEIEQAATAVT 306
Query: 99 QMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSE 158
+M+ ++E A A S + ++D +I+E +S++Q + + + L+
Sbjct: 307 EMSAAVDEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVDEVLGASNKAEGLAV 366
Query: 159 QAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAAN 218
QA I+ ++ + IA QTNLLALNAAIEA RAG+ G+GFAVVAD VR+LA++ + +
Sbjct: 367 QAQDISKVLEVIRGIAAQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQDSTEE 426
Query: 219 IESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKA 278
IE +I I G + + SS+++A +Q+ + L I + + + + V+ A
Sbjct: 427 IEQMITGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAAISQISQRNLVIASA 486
Query: 279 ADEMSSAA------VIALKGSESVSQAAQEQSAACEESLKSL 314
A++ + A ++ ++ + + A Q++A + L L
Sbjct: 487 AEQQALVARDVDRSLVNIRDLSTQTAAGATQTSAASQELSRL 528
Score = 90.5 bits (223), Expect = 2e-22
Identities = 74/329 (22%), Positives = 159/329 (48%), Gaps = 32/329 (9%)
Query: 317 QQIALDGAVTAAQSLDELTD---ELR-TSTDIVKSSEEVAAAAEELSAGIEEINRSSNEI 372
Q IA+ G AQ L L +L+ T I +S++++ AAEE+S+ +E+ R
Sbjct: 235 QPIAVSGKDEPAQLLTALATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQAQ 294
Query: 373 MGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTV 432
+ Q ++ M+ +V+ + + ++ E ++ + ++ I+ V
Sbjct: 295 NDEIEQAATAVTEMSAAVDEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQN---LV 351
Query: 433 DEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAG 492
DE++ A ++ A + ++ I K+++ I ++ QT +LA+N A+EAARAG
Sbjct: 352 DEVLGASNKAEGLAVQ-----------AQDISKVLEVIRGIAAQTNLLALNAAIEAARAG 400
Query: 493 EYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAA 552
E G+GFAVV+ ++++LA ++ E+I+ + IQ+ + + A++A
Sbjct: 401 EAGRGFAVVADEVRSLAQRTQDSTEEIEQMITGIQQ-------GTQGTVEALNSSAEQAG 453
Query: 553 LTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAAT 612
T+++ ++ S + + +IS +R++ A A QQ A A + +
Sbjct: 454 HTLQRANSAGSALEKITAAISQIS------QRNLVIASAAEQQ-ALVARDVDRSLVNIRD 506
Query: 613 AARQQSSSTSELASAIENIAAVADELQSI 641
+ Q ++ ++ ++A + ++ +A +L +
Sbjct: 507 LSTQTAAGATQTSAASQELSRLAVDLNGL 535
Score = 54.7 bits (130), Expect = 1e-11
Identities = 94/516 (18%), Positives = 219/516 (42%), Gaps = 70/516 (13%)
Query: 41 LARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVS-- 98
+A+ +Q+A + ++ + + +S++ + +R +E + + + S S+ ++
Sbjct: 34 MAKLRQSALVIEASWMPSIENIHDSAAIVASIR--LEALRLATTDESRIRDNSKALITRQ 91
Query: 99 --QMNNFINEQATYAT--QSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRM- 153
++ ++ T + + +++LT+LE + + + ++V+ V ++Q D++ +
Sbjct: 92 HTELQTLLDHHKTLLSGDEEREMLTQLEGNANAYLSLVGQIVALVD--KDQQQDAIDLLN 149
Query: 154 IELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAE 213
L+ Q +N ++ +I A+++A + + + G +V TL A
Sbjct: 150 SRLAPQGVILNKSLTDMITFNQSGVQTAVDSAAQTYSSAQWIVGSIIVLALTATLL-LAW 208
Query: 214 KNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTL---IRNEMVDLVK 270
+I + + A +++G S + + ++ T+ ++ + + +
Sbjct: 209 LLTRSITAPLGQALIVARTIASGDLSQPIAVSGKDEPAQLLTALATMQAQLQGTLRGISE 268
Query: 271 DSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQS 330
++ L AA+EMSS E+S + L Q ++ A TA
Sbjct: 269 SAQQLGCAAEEMSS---------------------VMEQSTRDLQAQNDEIEQAATAVTE 307
Query: 331 LDELTDELRTSTDIVKSSEEVAAAAE-------ELSAGIEEINRSSNEIMGALNQ---IS 380
+ DE+ + + V S+E A+ E ++S I I +E++GA N+ ++
Sbjct: 308 MSAAVDEV--AGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVDEVLGASNKAEGLA 365
Query: 381 SGAQHMAKSVE--------TGITSLTQIEQGARLGKERAESSLKACE--KMLTGIEENKT 430
AQ ++K +E T + +L + AR G+ ++ A E + +++
Sbjct: 366 VQAQDISKVLEVIRGIAAQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQDSTE 425
Query: 431 TVDEMILAITESTKAATENLNEMA-----NIERIS---RQIDKIVDGISNVSIQTAMLAV 482
+++MI I + T+ E LN A ++R + ++KI IS +S + ++A
Sbjct: 426 EIEQMITGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAAISQISQRNLVIAS 485
Query: 483 NGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQ 518
+A A + + +I++L+ A A Q
Sbjct: 486 AAEQQALVARDVDRSL----VNIRDLSTQTAAGATQ 517
Score = 26.6 bits (57), Expect = 0.003
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 60 AGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILT 119
+ LE+ ++A++Q+ IA AE+ + + + ++ + + + A ATQ+
Sbjct: 464 SALEKITAAISQISQRNLVIASAAEQQALVARDVDRSLVNIRDLSTQTAAGATQTSAASQ 523
Query: 120 KLEQDIVDVANKINEMV 136
+L + VD+ + V
Sbjct: 524 ELSRLAVDLNGLVARFV 540