Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 1e-32
 Identities = 79/277 (28%), Positives = 140/277 (50%), Gaps = 4/277 (1%)

Query: 41  LARKQQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETA 96
           L + Q+A + +     EL+ G+ +     +SA  QL +  EQ + G       T Q  TA
Sbjct: 342 LGQLQRAMQSMTVGLRELIGGISDGVTQIASAAEQLSAVTEQTSAGVNSQKVETDQVATA 401

Query: 97  VSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIEL 156
           +++M   + E A  A ++ +     +Q   +    + E ++ ++  +    +S   M +L
Sbjct: 402 MNEMAATVQEVARNAEEASEAAVAADQQAREGDKVVGEAIAQIERLATEVGNSTVAMGDL 461

Query: 157 SEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNA 216
             ++ KI   +  +  +A QTNLLALNAAIEA RAG+ G+GFAVVAD VR+LA++ +K+ 
Sbjct: 462 KRESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKST 521

Query: 217 ANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLL 276
             IE LI  + +G + V+  + +S    +S V+        L  I   +  +   +  + 
Sbjct: 522 EEIEELIVGLQSGTQQVATIMDNSRGLTDSSVELPRRAGSALASITRTVSTIQAMNSQIA 581

Query: 277 KAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
            AA++ S+ A    +   +V   +++ +AA EE+  S
Sbjct: 582 TAAEQQSAVAEEINRSVLNVRDVSEQTAAASEETAAS 618



 Score =  117 bits (293), Expect = 2e-30
 Identities = 148/650 (22%), Positives = 277/650 (42%), Gaps = 110/650 (16%)

Query: 20  HSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQI 79
           H +S N   K+   L R    + R +Q  + V +  A+L +GL+ ++  + Q        
Sbjct: 52  HISSLNGLTKDLR-LARLDFEMRRGEQGTDAVNNLIAKLDSGLQTAADLIEQ-------- 102

Query: 80  AVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNV 139
                +  +  +Q + A+SQ             + +   +KL     +   K++E+  ++
Sbjct: 103 ----PDDKALVEQQQDALSQYKKAFATMVQAGLKREGARSKLGDTADNAVAKVSEVEKSL 158

Query: 140 -QTSSERQNDSVKRMIELSEQAA--------------------KINDAVKQVIHIADQ-- 176
            Q  S  Q +SV  + +L +QA                      I++AVK++  +  Q  
Sbjct: 159 LQGDSVTQFNSVVDLSKLIQQARFQVRGYTYSAKVEAEQPALDAIDNAVKKITELQGQLP 218

Query: 177 ----TNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEM 232
                NL   + +++A RA                +++  +   A   +L    + G  +
Sbjct: 219 AQYQANLEEASTSLQAYRAA---------------VSQYRDSQTAAAAALKIMSAQGDTL 263

Query: 233 VSNGVKSS-SQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALK 291
           + +  K + SQ    +    H   KQL L+   +  +       L AA  ++   VI L 
Sbjct: 264 LGHSDKLTLSQTVVRDADAAHA--KQLLLLATVLALIFG-----LVAAWAITRQIVIPLN 316

Query: 292 GSESVSQAAQEQSAACEESLKSLDQQQIA-LDGAVTAAQ-SLDELTDELRTS-TDIVKSS 348
            +  V+Q     S     +L S+ Q ++  L  A+ +    L EL   +    T I  ++
Sbjct: 317 QTLQVAQRVA--SGDLSHNLTSMRQDELGQLQRAMQSMTVGLRELIGGISDGVTQIASAA 374

Query: 349 EEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGK 408
           E+++A  E+ SAG+      ++++  A+N++++  Q +A++ E    +    +Q AR G 
Sbjct: 375 EQLSAVTEQTSAGVNSQKVETDQVATAMNEMAATVQEVARNAEEASEAAVAADQQAREGD 434

Query: 409 ERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVD 468
           +    ++   E++ T  E   +TV                    M +++R S +I  ++D
Sbjct: 435 KVVGEAIAQIERLAT--EVGNSTV-------------------AMGDLKRESDKIGSVLD 473

Query: 469 GISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQE 528
            I +V+ QT +LA+N A+EAARAGE G+GFAVV+ ++++LA    ++ E+I++ +  +Q 
Sbjct: 474 VIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEELIVGLQS 533

Query: 529 QINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIAD 588
               V        +T+M             DN R      V   +R   +   I R+++ 
Sbjct: 534 GTQQV--------ATIM-------------DNSRGLTDSSVELPRRAGSALASITRTVST 572

Query: 589 ARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
            +A   QIATAAE+ S    E   +       + + A+A E  AA + EL
Sbjct: 573 IQAMNSQIATAAEQQSAVAEEINRSVLNVRDVSEQTAAASEETAASSTEL 622