Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  114 bits (286), Expect = 9e-30
 Identities = 75/278 (26%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 51  VASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSE-------TAVSQMNNF 103
           +A+  A L   ++  + + TQL S+ E+++   EE+S   +Q         TAV++M   
Sbjct: 252 LATMQANLRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQNNEIDQAATAVNEMTAA 311

Query: 104 INEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKI 163
           + E A  A  + +  ++  Q   +  +++ E V  +QT ++   ++   +  L+ Q   I
Sbjct: 312 VEEVARNAVSTSEASSQSNQAAREGRDRVVETVGAIQTMTQDVQNTAAMIEGLATQGRDI 371

Query: 164 NDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLI 223
              +  +  IA+QTNLLALNAAIEA RAG+ G+GFAVVAD VR LA +  ++   IE ++
Sbjct: 372 GKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMV 431

Query: 224 KDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMS 283
             I NG       ++ S+Q+ ++ ++        L  I  + + L+ +  +++ +A E  
Sbjct: 432 AGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQI-TQSISLINERNLVIASASEEQ 490

Query: 284 SAA-------VIALKGSESVSQAAQEQSAACEESLKSL 314
           +         ++ ++   + S A   Q++A    L  L
Sbjct: 491 AQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRL 528



 Score =  105 bits (262), Expect = 5e-27
 Identities = 69/282 (24%), Positives = 145/282 (51%), Gaps = 28/282 (9%)

Query: 340 TSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQ 399
           ++T +  ++EE++A  EE S G+++ N   ++   A+N++++  + +A++  +   + +Q
Sbjct: 269 SATQLASAAEELSAVTEEASKGLQQQNNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQ 328

Query: 400 IEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERI 459
             Q AR G++R   ++ A + M   ++     ++ +          AT+           
Sbjct: 329 SNQAAREGRDRVVETVGAIQTMTQDVQNTAAMIEGL----------ATQG---------- 368

Query: 460 SRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQI 519
            R I K++D I  ++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA+  A++ ++I
Sbjct: 369 -RDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEI 427

Query: 520 KDQVKNIQEQINIVRKDLADI---LSTVMEEAQKAALTIKQLDN----VRSRMSDVVLGS 572
           +  V  IQ       + +        T +E A+ A + ++Q+      +  R   +   S
Sbjct: 428 EKMVAGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQITQSISLINERNLVIASAS 487

Query: 573 KRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAA 614
           +  ++ +  ++R++ + R    Q A  A ++S A+ E +  A
Sbjct: 488 EEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLA 529



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 582 IERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           + ++I        Q+A+AAEE S  T EA+   +QQ++   + A+A+  + A  +E+
Sbjct: 259 LRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQNNEIDQAATAVNEMTAAVEEV 315