Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  117 bits (294), Expect = 9e-31
 Identities = 99/347 (28%), Positives = 167/347 (48%), Gaps = 45/347 (12%)

Query: 23  SANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVG 82
           SA  P    D++ + A      Q   +RV +  A     L++ ++   +L SSM ++  G
Sbjct: 186 SARVPLACKDEVGQMASAFNAMQAGYQRVVNTVAHTARQLDDGAA---RLASSMNEVQHG 242

Query: 83  AEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTS 142
                S T Q+ TA+++M   ++  A +A  ++     L Q    +A    E+V+ VQ S
Sbjct: 243 MLGQQSETDQAATAINEMTATVHHIAQHAGATRD----LSQTADTLAGSGQEVVTRVQRS 298

Query: 143 SERQNDSVKR---MIE-LSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGF 198
               +  V++   MI+ L+E + KIN  V  +  IA+QTNLLALNAAIEA RAG+ G+GF
Sbjct: 299 IAGLSTGVQQTAVMIQKLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGF 358

Query: 199 AVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQL 258
           AVVAD VR LA++ + +   I  ++  +  G     + ++ SS KA+             
Sbjct: 359 AVVADEVRNLAKRVQSSTDEITRMVSALQAGTRDAVDFMQESSFKAD------------- 405

Query: 259 TLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQ 318
                   D V  ++    A  E++ A     + +  ++ AA++QS   EE         
Sbjct: 406 --------DCVHQAQEAGAALAEITGAVAQMRESNTQIAVAAEQQSHVAEE--------- 448

Query: 319 IALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEI 365
             ++ AV + + + E T  ++ + D   +S ++A  A ELS  I ++
Sbjct: 449 --MNRAVVSIRDVTENT--VQQTVDSATTSNQLATLAGELSKAIGQL 491



 Score = 81.6 bits (200), Expect = 7e-20
 Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 35/295 (11%)

Query: 351 VAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKER 410
           VA  A +L  G   +  S NE+   +    S     A ++     ++  I Q A   ++ 
Sbjct: 218 VAHTARQLDDGAARLASSMNEVQHGMLGQQSETDQAATAINEMTATVHHIAQHAGATRDL 277

Query: 411 AESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGI 470
           ++++    + +    +E  T V   I  ++   +     + ++A     S++I+ +V  I
Sbjct: 278 SQTA----DTLAGSGQEVVTRVQRSIAGLSTGVQQTAVMIQKLAED---SQKINGVVSVI 330

Query: 471 SNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQI 530
            +++ QT +LA+N A+EAARAGE G+GFAVV+ +++NL       A++++     I   +
Sbjct: 331 HSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNL-------AKRVQSSTDEITRMV 383

Query: 531 NIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADAR 590
           + ++    D +  + E + KA               D V  ++    +   I  ++A  R
Sbjct: 384 SALQAGTRDAVDFMQESSFKA--------------DDCVHQAQEAGAALAEITGAVAQMR 429

Query: 591 AGMQQIATAAEESSHATGE---AATAARQQSSS----TSELASAIENIAAVADEL 638
               QIA AAE+ SH   E   A  + R  + +    T + A+    +A +A EL
Sbjct: 430 ESNTQIAVAAEQQSHVAEEMNRAVVSIRDVTENTVQQTVDSATTSNQLATLAGEL 484