Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417
Score = 119 bits (298), Expect = 3e-31
Identities = 82/281 (29%), Positives = 139/281 (49%), Gaps = 20/281 (7%)
Query: 40 TLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQ 99
TL A++++ASA EL A +ESS +T+ ++Q A TAV+Q
Sbjct: 261 TLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAA--------------TAVNQ 306
Query: 100 MNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQ 159
M ++E A+ A + + + + D ++ + VS + + NDS + + +L+ Q
Sbjct: 307 MTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQ 366
Query: 160 AAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANI 219
+I + + IADQTNLLALNAAIEA RAG+ G+GFAVVAD VR LA + + + +I
Sbjct: 367 VREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQISTVDI 426
Query: 220 ESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAA 279
E +I D+ GA+ + S A + + L I + + + + V+ A+
Sbjct: 427 EKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRITASVAKINERNLVIASAS 486
Query: 280 DEMSSAA------VIALKGSESVSQAAQEQSAACEESLKSL 314
+E + A ++ ++ + + A Q+ A + L L
Sbjct: 487 EEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRL 527
Score = 100 bits (248), Expect = 2e-25
Identities = 81/342 (23%), Positives = 161/342 (47%), Gaps = 27/342 (7%)
Query: 296 VSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDEL----RTSTDIVKSSEEV 351
++QA Q + L Q I + A Q L L+D T +I +S+++
Sbjct: 217 IAQAVQSAQRIAQGDLT----QAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQL 272
Query: 352 AAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERA 411
A+AAEELSA +E +R + Q ++ M +V+ ++ + +R A
Sbjct: 273 ASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEA 332
Query: 412 ESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGIS 471
E + E+ ++G+ M++ I +ST++ + ++ R+I K++D I
Sbjct: 333 EDGRQQVEQAVSGMSS-------MVVEINDSTQSVADLAGQV-------REIGKVIDVIR 378
Query: 472 NVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---- 527
++ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA+ + I+ + ++Q
Sbjct: 379 GIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQISTVDIEKMIGDVQTGAD 438
Query: 528 EQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIA 587
+ + + K L +T AQ A ++++ +++++ L SE + R +
Sbjct: 439 DAVAAMNKSLTWANNT-QTLAQNAGEALQRITASVAKINERNLVIASASEEQAQVAREVD 497
Query: 588 DARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIE 629
+Q ++T +H T ++ + ++S + L S +
Sbjct: 498 RNLLNIQDLSTQTAAGAHQTNASSQDLSRLATSFNVLVSKFQ 539
Score = 51.6 bits (122), Expect = 9e-11
Identities = 88/452 (19%), Positives = 186/452 (41%), Gaps = 70/452 (15%)
Query: 107 QATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSER--------QNDSVKRMIELSE 158
QA+YAT T LE D +K++++ +SSER Q D + + S
Sbjct: 95 QASYATYRA---TPLEDDERAAGDKLDQIWPTYISSSERIMALLDGGQVDQARAQLNTSN 151
Query: 159 QAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAAN 218
++ +++I + ++N N I+ G AV AD +R A +
Sbjct: 152 N--ELFRQARELIRVMIESN----NRQIKEG---------AVAADELRNSALTWMISGIV 196
Query: 219 IESLIKDISNG------AEMVSNGVKSSSQKAESEVQKGHVVNK-----QLTLIRNEMVD 267
+ LI I ++ V+S+ + A+ ++ + + + QL + ++M
Sbjct: 197 LAFLIAIIIGVLITRLITRPIAQAVQSAQRIAQGDLTQAIITERTDEAGQLLMALSDMQG 256
Query: 268 LVKDSEV-LLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVT 326
+K + V + A+D+++SAA ++ S+ Q+ +++ +++Q A+D +
Sbjct: 257 GLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVAS 316
Query: 327 AAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHM 386
A S E + + +T+ ++V A +S+ + EIN S+ + Q+ + +
Sbjct: 317 NAVSTSEASRQ--ATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVREIGKVI 374
Query: 387 ----AKSVETGITSLTQIEQGARLGKE----------------RAESSLKACEKMLTGIE 426
+ +T + +L + AR G++ R + S EKM+ ++
Sbjct: 375 DVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQISTVDIEKMIGDVQ 434
Query: 427 ENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAV 486
T D+ + A+ +S A N + + +I ++ ++ + ++A
Sbjct: 435 ---TGADDAVAAMNKSLTWAN---NTQTLAQNAGEALQRITASVAKINERNLVIASASEE 488
Query: 487 EAARAGEYGKGFAVVSTDIQNLANDAAENAEQ 518
+A A E + +IQ+L+ A A Q
Sbjct: 489 QAQVAREVDRNL----LNIQDLSTQTAAGAHQ 516
Score = 42.0 bits (97), Expect = 7e-08
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 575 ISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAV 634
+S+ GG++ ++ + Q+A+AAEE S T E++ +Q+ + A+A+ + A
Sbjct: 251 LSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAA 310
Query: 635 ADELQS 640
DE+ S
Sbjct: 311 VDEVAS 316
Score = 26.2 bits (56), Expect = 0.004
Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 526 IQEQINIVRKDLAD-ILSTVMEEAQKAALTIKQLDN-VRSRMSDVVLGSKRISESAGGIE 583
+Q I + DL I++ +EA + + + + ++S + ++ S +++ +A +
Sbjct: 221 VQSAQRIAQGDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELS 280
Query: 584 RSIADARAGM-------QQIATAAEESSHATGEAATAARQQSSSTSELASAIEN 630
++ G+ QQ ATA + + A E A+ A S ++ + + E+
Sbjct: 281 AVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAED 334