Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (285), Expect = 1e-29
 Identities = 82/274 (29%), Positives = 136/274 (49%), Gaps = 14/274 (5%)

Query: 56  AELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSK 115
           AE+L G E +S  + Q   +M       E+ ++A  +  T  S + N     A  A  + 
Sbjct: 354 AEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVAN----NAQGAASAA 409

Query: 116 QILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIAD 175
           ++         DV  K  + +  +  + +   D VK    L    A I   +K +  IAD
Sbjct: 410 KVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVK---VLESATANIETVLKVINDIAD 466

Query: 176 QTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSN 235
           QTNLLALNAAIEA RAG+ G+GFAVVAD VRTLA++ +++   I ++I+ + +GA  V+ 
Sbjct: 467 QTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAV 526

Query: 236 GVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAA------VIA 289
            +  S   A S V +    N+ L  IR  +  +   +  +  AA+E S  A       + 
Sbjct: 527 AMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVK 586

Query: 290 LKG-SESVSQAAQEQSAACEESLKSLDQQQIALD 322
           +K  S+ V+++A E + + +   +++ +Q   L+
Sbjct: 587 IKDLSDQVAESADEANMSMQIQTENIREQDAILN 620



 Score = 82.4 bits (202), Expect = 5e-20
 Identities = 83/330 (25%), Positives = 148/330 (44%), Gaps = 47/330 (14%)

Query: 322 DGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRS--SNEIMGA--LN 377
           D     A    +LT  L T+TD     EE A  A   +   E + +    ++ +GA  L 
Sbjct: 304 DAIQNVASGEGDLTQRLSTNTD-----EEFAKLAIGFNTFTETLQKQLIQSKAIGAEILR 358

Query: 378 QISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMIL 437
              S +  + +S E   + L ++EQ A    E A +S              K   D    
Sbjct: 359 GSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAA 418

Query: 438 A---ITESTKA-----ATEN--LNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVE 487
               +T++TKA     AT +  ++++  +E  +  I+ ++  I++++ QT +LA+N A+E
Sbjct: 419 GTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIE 478

Query: 488 AARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEE 547
           AARAGE G+GFAVV+ +++ LA    ++  +I++ ++ +Q   N V   ++    T    
Sbjct: 479 AARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDT---- 534

Query: 548 AQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHAT 607
              AA  + Q       +  + L  ++IS+                 QIA+AAEE S   
Sbjct: 535 ---AASAVNQAQGANEALEKIRLAIQQISDM--------------NIQIASAAEEQS--- 574

Query: 608 GEAATAARQQSSSTSELASAIENIAAVADE 637
                 A + +++T ++    + +A  ADE
Sbjct: 575 ----LVAEEINNNTVKIKDLSDQVAESADE 600



 Score = 55.5 bits (132), Expect = 7e-12
 Identities = 66/294 (22%), Positives = 124/294 (42%), Gaps = 41/294 (13%)

Query: 272 SEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIAL---------- 321
           +E L K   +  +     L+GSES S   Q+ + A    L  L+Q   A+          
Sbjct: 339 TETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDV 398

Query: 322 ----DGAVTAAQSLDEL----TDELRTSTDIVKSSEEVAAAA-------EELSAGIEEIN 366
                GA +AA+  D+     TD +  +T  + +      AA       E  +A IE + 
Sbjct: 399 ANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVL 458

Query: 367 RSSNEIMGALNQIS-SGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGI 425
           +  N+I    N ++ + A   A++ E+G      +    R   +R + S      M   I
Sbjct: 459 KVINDIADQTNLLALNAAIEAARAGESG-RGFAVVADEVRTLAQRTQQSTTEIRNM---I 514

Query: 426 EENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGA 485
           E+ ++  + + +A++ S   A   +N+         +I   +  IS+++IQ A  A   +
Sbjct: 515 EKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQS 574

Query: 486 VEAARAGEYGKGFAVVSTDIQNLANDAAENAEQ----IKDQVKNIQEQINIVRK 535
           + A             +  I++L++  AE+A++    ++ Q +NI+EQ  I+ K
Sbjct: 575 LVAEEINNN-------TVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNK 621