Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  116 bits (290), Expect = 3e-30
 Identities = 90/308 (29%), Positives = 147/308 (47%), Gaps = 24/308 (7%)

Query: 9   TSASSSFSPSNHSTSANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSA 68
           T   SS       T ANA ++   +LR          Q  + + SA  +L + +EE    
Sbjct: 235 TMDRSSIGNDELGTLANASEQMQQNLR----------QLIDEIISAVTQLSSAVEE---- 280

Query: 69  MTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDV 128
           MTQ+ +   Q A G +E      Q  TA++QM   + + A     S            + 
Sbjct: 281 MTQISN---QSADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEG 337

Query: 129 ANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEA 188
           A +   MV ++Q  ++   ++ + + EL +Q+++IN  V  +  IADQTNLLALNAAIEA
Sbjct: 338 ARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEA 397

Query: 189 GRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEV 248
            RAG+ G+GFAVVAD VRTLA + + +   I ++I+ +   A+   +  + S    +  V
Sbjct: 398 ARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCV 457

Query: 249 QKGHVVNKQLTLIRNEMVDLVKDSEVLLKA-------ADEMSSAAVIALKGSESVSQAAQ 301
           ++G+     +  I   + ++      +  A       ADE+S         S+ V+Q +Q
Sbjct: 458 EQGNHSQSLMISIEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQ 517

Query: 302 EQSAACEE 309
           + + AC E
Sbjct: 518 QTAQACRE 525



 Score = 97.8 bits (242), Expect = 1e-24
 Identities = 84/342 (24%), Positives = 154/342 (45%), Gaps = 36/342 (10%)

Query: 301 QEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSA 360
           Q  + A  +  +++D+  I  D   T A + +++   LR   D      E+ +A  +LS+
Sbjct: 223 QSNAIAKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLID------EIISAVTQLSS 276

Query: 361 GIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSL-TQIEQGARLGKERAESSLKACE 419
            +EE+ + SN+    + +     Q+    V T +  +   +   AR  ++ A  ++ A  
Sbjct: 277 AVEEMTQISNQSADGMKE----QQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANH 332

Query: 420 KMLTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAM 479
           K   G  EN +    M+ +I +      E    ++ +E+ S QI+ +VD I +++ QT +
Sbjct: 333 KSQEGARENAS----MVRSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNL 388

Query: 480 LAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLAD 539
           LA+N A+EAARAGE G+GFAVV+ +++ LA    ++      ++  I E++ ++ K   D
Sbjct: 389 LALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDST----GEITTIIEKLQVMAKQAKD 444

Query: 540 ILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATA 599
                     K    ++Q ++ +S M                IE SIA+      QIA+A
Sbjct: 445 ATERSRSSIDKC---VEQGNHSQSLMI--------------SIEESIANIADVGTQIASA 487

Query: 600 AEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
             E      E +        ++ E+A   +  A    EL  +
Sbjct: 488 CSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQL 529