Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  113 bits (283), Expect = 2e-29
 Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 84  EESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSS 143
           E+     +Q  TA+++M    +E A  A  +     + E   ++ ++ ++E    +Q  S
Sbjct: 377 EQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLS 436

Query: 144 ERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVAD 203
            R   SV+ + EL +   +I   +  +  IADQTNLLALNAAIEA RAG+ G+GFAVVAD
Sbjct: 437 IRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVAD 496

Query: 204 TVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRN 263
            VRTLA++ +++   I  +I+ +  GA+ VS  +  S  + +  V+K + VN++++L++ 
Sbjct: 497 EVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQ 556

Query: 264 EMVDLVKDSEVLLKAADEMSSAAV-----------IALKGSESVSQAAQEQSA 305
            +  +   +  +  AA+E S  A            +++K SE+ S A  E +A
Sbjct: 557 AIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNA 609



 Score = 82.4 bits (202), Expect = 5e-20
 Identities = 74/319 (23%), Positives = 146/319 (45%), Gaps = 17/319 (5%)

Query: 321 LDGAVT-AAQSLDELTDELRTSTDIVKSSEEVAAA----AEELSAGIEEINRSSNEIMGA 375
           LD A+   A    +LT +L T+ D  K   E+A       E L + I ++   ++ ++  
Sbjct: 304 LDSAIKDIASGGGDLTKKLDTNLD--KEFSELALGFNSFTEMLGSQIRQLKTIASGVLDG 361

Query: 376 LNQISSGAQHMAKSVETGITSLTQI----EQGARLGKERAESSLKACEKMLTGIE---EN 428
             + ++ A+     VE  +  L Q+     + A    E A S+  A +    G     E 
Sbjct: 362 AEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEG 421

Query: 429 KTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEA 488
            + V E   AI   +     ++ ++  + + + +I+ ++D I++++ QT +LA+N A+EA
Sbjct: 422 SSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEA 481

Query: 489 ARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADI---LSTVM 545
           ARAGE G+GFAVV+ +++ LA    ++  QI + ++ +QE    V + + +       V+
Sbjct: 482 ARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVV 541

Query: 546 EEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSH 605
           E+  +    I  +     R+SD+ L     +E    +   I +    ++ ++    E++ 
Sbjct: 542 EKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAAS 601

Query: 606 ATGEAATAARQQSSSTSEL 624
             G    A   +    +EL
Sbjct: 602 NAGTEMNAQVSKVKEQNEL 620



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 59/304 (19%), Positives = 123/304 (40%), Gaps = 51/304 (16%)

Query: 196 KGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVN 255
           K F+ +A    +  E        ++++   + +GAE  +N  + S    E ++Q+     
Sbjct: 328 KEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQE----L 383

Query: 256 KQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLD 315
           +QL    NEM             A E++++A +A   ++    A+ E S+   E+  ++ 
Sbjct: 384 EQLATAMNEMA----------MTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQ 433

Query: 316 QQQIALDGAVTAAQSLDELTDELRTSTDIV----------------------KSSEEVAA 353
           +  I +  +V   + L + TD + T  D++                      +S    A 
Sbjct: 434 RLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAV 493

Query: 354 AAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKS-----VETGIT---------SLTQ 399
            A+E+    +   +S+ +I   + Q+  GA+++++S     +ET I           ++ 
Sbjct: 494 VADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISL 553

Query: 400 IEQGA-RLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIER 458
           ++Q   R+     + +  A E+ L   E N  TV+   L+I  S  A+       A + +
Sbjct: 554 VQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSK 613

Query: 459 ISRQ 462
           +  Q
Sbjct: 614 VKEQ 617