Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  122 bits (306), Expect = 5e-32
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 11/304 (3%)

Query: 24  ANAPKKEADDLRRQARTLARKQQAAERVASATAELLAGLEES----SSAMTQLRSSMEQI 79
           A     + D ++R+   + + Q +   +  +  +L+ G+++     S A TQL +S E  
Sbjct: 335 AKGDLSQVDTVQRRDE-MGQLQTSMREMTLSLRDLIGGIDQGVGQLSQAATQLAASSEDT 393

Query: 80  AVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNV 139
            +   +    T Q  TA++QM+  + E A  A Q+    T  +Q        ++E +  +
Sbjct: 394 KLRINQQREETDQVATAMNQMSATVQEVAQNAEQASLAATNADQQAQVGDQVVSEAIGRI 453

Query: 140 QTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFA 199
           +  + + +  +  M  L+ ++ +I   +  +  +++QTNLLALNAAIEA RAG+ G+GFA
Sbjct: 454 EQLAGQMDHCLAAMQHLAGESQRIGSILDVIKSVSEQTNLLALNAAIEAARAGEAGRGFA 513

Query: 200 VVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLT 259
           VVAD VR LA++       I  LI  + NG + V+  + SS    E  V+        L+
Sbjct: 514 VVADEVRGLAQRTSTATEEIGQLIDSLHNGTDEVTRLLDSSKSLTEQSVELSRRAGHALS 573

Query: 260 LIRNEMVDLVKDSEVLLKAADEMSSAA------VIALKGSESVSQAAQEQSAACEESLKS 313
            I + +  +   ++ +  A++E S  A      VI ++     + AA EQ+AA    L+ 
Sbjct: 574 QITDTVSSIQGMNQQIATASEEQSVVAEQINRSVINVRDVSDQTSAASEQTAASSGELEQ 633

Query: 314 LDQQ 317
           L QQ
Sbjct: 634 LGQQ 637



 Score =  102 bits (254), Expect = 5e-26
 Identities = 108/479 (22%), Positives = 205/479 (42%), Gaps = 61/479 (12%)

Query: 158 EQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAA 217
           E  AK+ D     ++ AD +    L      G      +   V     RT  ++  + A 
Sbjct: 200 EDFAKVGD---NALNAADSSLAQLLEGLAPLGLPRAISEQPGVELSKYRTSLDQYRRAAV 256

Query: 218 NIESLIKDISNGAEMVSNGVKSSS-----QKAESEVQKGHVVNKQLTLIRNEMVDLVKDS 272
            +E L     N  E++ N +++ S     +K E   ++       LT            S
Sbjct: 257 RVEQL----QNNMEIMGNELRTVSLDLGKRKVEQRDREALAARSLLT------------S 300

Query: 273 EVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLD 332
             LL       +A +I L+ ++ + Q     +   +  L  +D  Q   D       S+ 
Sbjct: 301 VALLAMVVGALAAWLITLQITQPLRQTLAVAARIAKGDLSQVDTVQ-RRDEMGQLQTSMR 359

Query: 333 ELTDELRTST--------DIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQ 384
           E+T  LR            + +++ ++AA++E+    I +    ++++  A+NQ+S+  Q
Sbjct: 360 EMTLSLRDLIGGIDQGVGQLSQAATQLAASSEDTKLRINQQREETDQVATAMNQMSATVQ 419

Query: 385 HMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTK 444
            +A++ E    + T  +Q A++G +                      V E I  I +   
Sbjct: 420 EVAQNAEQASLAATNADQQAQVGDQ---------------------VVSEAIGRIEQLAG 458

Query: 445 AATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTD 504
                L  M ++   S++I  I+D I +VS QT +LA+N A+EAARAGE G+GFAVV+ +
Sbjct: 459 QMDHCLAAMQHLAGESQRIGSILDVIKSVSEQTNLLALNAAIEAARAGEAGRGFAVVADE 518

Query: 505 IQNLA---NDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQL--- 558
           ++ LA   + A E   Q+ D + N  +++  +      +    +E +++A   + Q+   
Sbjct: 519 VRGLAQRTSTATEEIGQLIDSLHNGTDEVTRLLDSSKSLTEQSVELSRRAGHALSQITDT 578

Query: 559 -DNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQ 616
             +++     +   S+  S  A  I RS+ + R    Q + A+E+++ ++GE     +Q
Sbjct: 579 VSSIQGMNQQIATASEEQSVVAEQINRSVINVRDVSDQTSAASEQTAASSGELEQLGQQ 637



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 54/336 (16%)

Query: 318 QIALDGAVTAAQ-SLDELTDELRTSTDIVKSSEE-----VAAAAEELSAGIEEINRSSNE 371
           ++AL  A+ + + +L E  D+L+T   ++K  ++     V    + LS  +E  N+ S  
Sbjct: 133 RVALREALQSQEHALSEAIDQLQTQA-LLKMPDDSQQSGVLGLMDTLSRHVEGANQQSLV 191

Query: 372 IMGALNQISSGAQHMAKSVETGITSLTQIEQG-ARLGKERAESSLKACEKMLTGIEENKT 430
                  +   A+    ++    +SL Q+ +G A LG  RA S     E     + + +T
Sbjct: 192 PAYTFVPVEDFAKVGDNALNAADSSLAQLLEGLAPLGLPRAISEQPGVE-----LSKYRT 246

Query: 431 TVDEMILAITESTKAATENLNEMAN-IERISRQIDKI-VDGISNVSIQTAMLAVNGAVEA 488
           ++D+   A     +    N+  M N +  +S  + K  V+     ++    L  + A+ A
Sbjct: 247 SLDQYRRAAVR-VEQLQNNMEIMGNELRTVSLDLGKRKVEQRDREALAARSLLTSVALLA 305

Query: 489 ARAGEYGKGFAV--VSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVME 546
              G          ++  ++     AA  A+    QV  +Q      R+D    L T M 
Sbjct: 306 MVVGALAAWLITLQITQPLRQTLAVAARIAKGDLSQVDTVQ------RRDEMGQLQTSMR 359

Query: 547 EAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESS-- 604
           E     L+++ L                     GGI++ +        Q+A ++E++   
Sbjct: 360 EM---TLSLRDL--------------------IGGIDQGVGQLSQAATQLAASSEDTKLR 396

Query: 605 -----HATGEAATAARQQSSSTSELASAIENIAAVA 635
                  T + ATA  Q S++  E+A   E  +  A
Sbjct: 397 INQQREETDQVATAMNQMSATVQEVAQNAEQASLAA 432