Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  128 bits (321), Expect = 9e-34
 Identities = 82/277 (29%), Positives = 142/277 (51%), Gaps = 4/277 (1%)

Query: 41  LARKQQAAERVASATAELLAGLEES----SSAMTQLRSSMEQIAVGAEESSSATKQSETA 96
           L + Q +  R+     EL+ G+ +     +SA  +L +  EQ + G       T Q  TA
Sbjct: 342 LGQLQASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATA 401

Query: 97  VSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIEL 156
           ++QM   ++E A  A Q+ +     +Q   +    + E V+ ++  +    +S + M  L
Sbjct: 402 MNQMTATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLL 461

Query: 157 SEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNA 216
             ++ KI   +  +  +A QTNLLALNAAIEA RAG+ G+GFAVVAD VR+LA++ +++ 
Sbjct: 462 KTESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQST 521

Query: 217 ANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLL 276
             IE LI  + +G + V++ + +S Q  +S V+        L  I   +  +   ++ + 
Sbjct: 522 EEIEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIA 581

Query: 277 KAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
            AA+E ++ A    +   +V   + + SAA EE+  S
Sbjct: 582 TAAEEQTAVAEEINRSVMNVRDISDQTSAASEETASS 618



 Score =  109 bits (272), Expect = 4e-28
 Identities = 141/625 (22%), Positives = 264/625 (42%), Gaps = 79/625 (12%)

Query: 33  DLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQ 92
           D RR   +LA  ++A   +     +L+ G  E  +   +L    E + +  +++ +  KQ
Sbjct: 71  DRRRDDASLAELEKALSNL-DRQVQLMLGQIEQPADHQRLEQQREAVRI-YQQAFNELKQ 128

Query: 93  SETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVK- 151
           ++       + +   A  A     ++ ++++ ++  AN IN+    V  S+  Q    + 
Sbjct: 129 ADQRREASRDVLGSSADKAVD---LIGRVQRSLLQGAN-INQYQHAVDVSALLQQARFQV 184

Query: 152 RMIELSEQAAKINDAVKQVIHIADQT--NLLALNAAIEAGRAGKHGKGFAVVADTVRTLA 209
           R    S  A     A+K +    DQ    L AL A + A  A         +      + 
Sbjct: 185 RGYTYSGNADYQQTALKAI----DQALAELRALPAKVPAEHAASLDDAATAMGGYRDAVT 240

Query: 210 EKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLV 269
           +      A+ ++L + +  G  ++      ++ + E            LT      V  V
Sbjct: 241 QFGNAQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLT------VATV 294

Query: 270 KDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLK-----SLDQQQIALDGA 324
               + L AA  ++   +I L+  +++  A +  S    +SL+      L Q Q ++   
Sbjct: 295 LALALGLLAAWAITRQIIIPLR--QTLRAAERVASGDLTQSLQVQRRDELGQLQASMH-- 350

Query: 325 VTAAQSLDELTDELRTS-TDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGA 383
               Q L EL   +    T I  ++EE++A  E+ SAG+      ++++  A+NQ+++  
Sbjct: 351 -RMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATV 409

Query: 384 QHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITEST 443
             +A++ E    +    +Q AR G      ++   E++ + +  +    + M L  TES 
Sbjct: 410 HEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSS---EAMNLLKTESD 466

Query: 444 KAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVST 503
           K                  I  ++D I +V+ QT +LA+N A+EAARAGE G+GFAVV+ 
Sbjct: 467 K------------------IGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVAD 508

Query: 504 DIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRS 563
           ++++LA    ++ E+I++ +  +Q                     Q+ A     +DN R 
Sbjct: 509 EVRSLAQRTQQSTEEIEELIAGLQ------------------SGTQRVA---SVMDNSRQ 547

Query: 564 RMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGE-------AATAARQ 616
                V  ++R   S   I R+++  +A  QQIATAAEE +    E           + Q
Sbjct: 548 LTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQ 607

Query: 617 QSSSTSELASAIENIAAVADELQSI 641
            S+++ E AS+   +A +   LQ +
Sbjct: 608 TSAASEETASSSVELARLGTHLQGL 632