Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 686 a.a., Protein PilJ from Pseudomonas putida KT2440
Score = 104 bits (260), Expect = 1e-26
Identities = 85/287 (29%), Positives = 145/287 (50%), Gaps = 30/287 (10%)
Query: 66 SSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDI 125
++A+ +++ Q+A +E ++ ++ AV M I+ + +A +S K+ +
Sbjct: 412 AAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYES----AKVAERS 467
Query: 126 VDVANKINEMVSN----VQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLA 181
V +ANK NE+V N + E+ D+ KR+ L E + +I D V + IADQTN+LA
Sbjct: 468 VAIANKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILA 527
Query: 182 LNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSS 241
LNAAI+A AG+ G+GFAVVAD V+ LAE++ IE+L++ I + +N S
Sbjct: 528 LNAAIQASLAGEAGRGFAVVADEVQRLAERSSSATRQIEALVRTI----QADTNEAVISM 583
Query: 242 QKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQ 301
++ +EV +G L +D+ V L + +S + S+S AAQ
Sbjct: 584 EQTTAEVVRG--------------ARLAQDAGVALAEIEGVSQNLADLI---HSISDAAQ 626
Query: 302 EQ-SAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKS 347
Q S+A + S QQI + + + D + R ++++ +S
Sbjct: 627 LQTSSAGQISHTMAVIQQITAQTSAGSGATADSIRHLARMASEMRRS 673
Score = 94.7 bits (234), Expect = 1e-23
Identities = 125/637 (19%), Positives = 258/637 (40%), Gaps = 75/637 (11%)
Query: 48 AERVASATAELLAGLEESSSAMTQLRSSMEQI---------AVGAEESSSATKQSETAVS 98
++R+A E G + ++ R+ E+ + G + A + +V
Sbjct: 65 SQRIAKNATEAATGKALAFKLLSDARNDFERRWGYLRQGDKSTGLPPAPPAVRDEMESVR 124
Query: 99 QMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSER------QNDSVKR 152
+ + + S+Q + L Q VA + E V +Q E+ Q+ +
Sbjct: 125 RDWENLRKNTDIILASEQTVLSLHQ----VAATLAETVPQLQVEYEKVVEILLQSGAPAN 180
Query: 153 MIELSEQ----AAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVR-T 207
+ ++++ A +I +V V+ D A +AGR G+ +G T++ T
Sbjct: 181 QVAVAQRQLLLAERILGSVNTVLAGDDSAAQAADAFGRDAGRFGQVLEGMINGNATIQVT 240
Query: 208 LAEKAEKNA--ANIESLIKDISNGAEMV-------------SNGVKSSSQKAESEVQKGH 252
E A+ A A I L + ++ + + + + S SQ E H
Sbjct: 241 RVEDADARARLAEIAELFQFVAGSVDEILETSPELFRVREAAGNIFSLSQTLLDEAS--H 298
Query: 253 VVNKQLTLIRNEMVDLVKDSEV-LLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESL 311
+ N L +D V + LL A + V+ + + + A++ + +
Sbjct: 299 LANGFENLAGGRTLDTVGGYVLGLLALASIILIGLVMVRTTNRQLRETAEKNERNQQAIM 358
Query: 312 KSLDQQQIALDGAVTAAQSLDE-----LTDELRTSTDIVKSS-EEVAAAAEELSAGIEEI 365
+ LD+ + DG +T S+ E + D + S D ++ + +A +++A +++
Sbjct: 359 RLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSAVQVAAAVQDT 418
Query: 366 NRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKMLTGI 425
++ Q++ ++H A + ++ + + A S K E+ +
Sbjct: 419 QNTAR-------QLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSVAIA 471
Query: 426 EENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGA 485
+ V I + + + + + S++I IV I +++ QT +LA+N A
Sbjct: 472 NKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILALNAA 531
Query: 486 VEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVM 545
++A+ AGE G+GFAVV+ ++Q LA ++ QI+ V+ IQ N + + V+
Sbjct: 532 IQASLAGEAGRGFAVVADEVQRLAERSSSATRQIEALVRTIQADTNEAVISMEQTTAEVV 591
Query: 546 EE---AQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEE 602
AQ A + + +++ V ++D++ SI+DA Q ++A +
Sbjct: 592 RGARLAQDAGVALAEIEGVSQNLADLI--------------HSISDA---AQLQTSSAGQ 634
Query: 603 SSHATGEAATAARQQSSSTSELASAIENIAAVADELQ 639
SH Q S+ + A +I ++A +A E++
Sbjct: 635 ISHTMAVIQQITAQTSAGSGATADSIRHLARMASEMR 671
Score = 43.9 bits (102), Expect = 2e-08
Identities = 101/505 (20%), Positives = 187/505 (37%), Gaps = 73/505 (14%)
Query: 202 ADTVRTLAEKAEKNAANIES-------LIKDISNGAEMVSNGVKSSSQKAESEVQKGHVV 254
A +R L+++ KNA + L+ D N E G K+ V
Sbjct: 58 AGELRVLSQRIAKNATEAATGKALAFKLLSDARNDFER-RWGYLRQGDKSTGLPPAPPAV 116
Query: 255 NKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSL 314
++ +R + +L K+++++L + + S +A +E+V Q E E L+S
Sbjct: 117 RDEMESVRRDWENLRKNTDIILASEQTVLSLHQVAATLAETVPQLQVEYEKVVEILLQSG 176
Query: 315 DQQQIALDGAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEEL---------------- 358
A V AQ L + + S + V + ++ AA A +
Sbjct: 177 -----APANQVAVAQRQLLLAERILGSVNTVLAGDDSAAQAADAFGRDAGRFGQVLEGMI 231
Query: 359 --SAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITS---LTQIEQGARLGKERAES 413
+A I+ + L +I+ Q +A SV+ + + L ++ + A +++
Sbjct: 232 NGNATIQVTRVEDADARARLAEIAELFQFVAGSVDEILETSPELFRVREAAGNIFSLSQT 291
Query: 414 SLKACEKMLTGIEE--NKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGIS 471
L + G E T+D + + A+ L + + +RQ+ + +
Sbjct: 292 LLDEASHLANGFENLAGGRTLDTVGGYVLGLLALASIILIGLVMVRTTNRQLRETAE--K 349
Query: 472 NVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQIN 531
N Q A++ + +E G+ +V +A+ + +Q++D V I
Sbjct: 350 NERNQQAIMRLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSAV 409
Query: 532 IVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRIS----ESAGGIERSIA 587
V + D +T + A+ + Q+ + D+V R+S ESA ERS+A
Sbjct: 410 QVAAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSVA 469
Query: 588 DARAG--------------MQQIATAAE------ESSHATGEAATAARQQSSSTSELA-- 625
A G +QI A+ ESS G+ + + T+ LA
Sbjct: 470 IANKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILALN 529
Query: 626 ---------SAIENIAAVADELQSI 641
A A VADE+Q +
Sbjct: 530 AAIQASLAGEAGRGFAVVADEVQRL 554
Score = 26.2 bits (56), Expect = 0.005
Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 45 QQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFI 104
Q+ AER +SAT ++ A + + + SMEQ + + + A++++
Sbjct: 552 QRLAERSSSATRQIEALVRTIQADTNEAVISMEQTTAEVVRGARLAQDAGVALAEIEGVS 611
Query: 105 NEQATY---ATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQ 159
A + + Q+ T I I ++ + S DS++ + ++ +
Sbjct: 612 QNLADLIHSISDAAQLQTSSAGQISHTMAVIQQITAQTSAGSGATADSIRHLARMASE 669