Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  134 bits (337), Expect = 1e-35
 Identities = 86/295 (29%), Positives = 149/295 (50%), Gaps = 9/295 (3%)

Query: 28  KKEADDLRRQARTLARK-----QQAAERVASATAELLAGLEES----SSAMTQLRSSMEQ 78
           K  + DL +  R   R      QQ   R+ +   EL++G+ +     +SA  +L +  EQ
Sbjct: 325 KIASGDLTQHMRVTRRDELGVLQQGIARMGTTLRELISGIRDGVTQIASAAEELSAVTEQ 384

Query: 79  IAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSN 138
            + GA      T Q  TA+ +M   + E A  A Q+    T  + +       + E +  
Sbjct: 385 TSAGANSQKVETDQVATAMHEMAATVQEVARNAEQASHAATGADDEARAGDRVVGEAIGQ 444

Query: 139 VQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGF 198
           ++  +E  + S + M  L +++ KI   +  +  +A+QTNLLALNAAIEA RAG+ G+GF
Sbjct: 445 IERLAEDMHRSTEAMNLLQQESQKIGSVMDVIKSVAEQTNLLALNAAIEAARAGEAGRGF 504

Query: 199 AVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQL 258
           AVVAD VR LA++ +K+   IE LI  + +G + V+N ++ S    +S V+        L
Sbjct: 505 AVVADEVRGLAQRTQKSTEEIEELIASLQHGTQQVANAMQGSRALTDSSVELARKAGSSL 564

Query: 259 TLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKS 313
             I + +  +   ++ +  AA++ S+ A    +   +V   +++ +AA +E+  S
Sbjct: 565 ESITSTVSSIQSMNQQIAAAAEQQSAVAEEISRSILNVRDVSEQTAAASDETAAS 619



 Score =  112 bits (279), Expect = 7e-29
 Identities = 141/657 (21%), Positives = 275/657 (41%), Gaps = 96/657 (14%)

Query: 9   TSASSSFSPSNHSTSANAPKKEADDLR--------------RQARTLAR-----KQQAAE 49
           TS  S    SN         K+  DLR                A TLA+     KQQA  
Sbjct: 34  TSLGSLIDRSNWMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYL 93

Query: 50  RVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQAT 109
                + E +  L E    ++  + S+ ++  G + + +A       VS  ++ I     
Sbjct: 94  ATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAAR------VSMDSSAIRADQA 147

Query: 110 YATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQ 169
               S++++ + E D V +A    +++S  +    +    V+  I     +A    A++Q
Sbjct: 148 MDALSQEVMARPEADSVRLAQY--QLISKARQQLLQVRIDVRGYIA-ENSSANEQAALRQ 204

Query: 170 VIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNG 229
           +      T+ L      E  R  +         D VR   +      ANI          
Sbjct: 205 LDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAV----ANI---------- 250

Query: 230 AEMVSNGVKSSSQKAESEVQKGHVVNKQLTL--IRNEMVDLVKDSEVLLKAADEMSSAAV 287
                     ++ +AE  VQ   +V +   L  I+ E  D+       L+A   + +  V
Sbjct: 251 ----------TTSRAEMTVQGADIVKRSDALYQIQLERRDIESTQARSLQAIATLLALLV 300

Query: 288 IALKG---SESVSQAAQEQSAACEE----------SLKSLDQQQIALDGAVTAAQSLDEL 334
             L     +  +++  Q+   A E+           +   D+  +   G      +L EL
Sbjct: 301 GVLAAVLITRQITRPLQDTLVAVEKIASGDLTQHMRVTRRDELGVLQQGIARMGTTLREL 360

Query: 335 TDELRTS-TDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETG 393
              +R   T I  ++EE++A  E+ SAG       ++++  A++++++  Q +A++ E  
Sbjct: 361 ISGIRDGVTQIASAAEELSAVTEQTSAGANSQKVETDQVATAMHEMAATVQEVARNAEQA 420

Query: 394 ITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEM 453
             + T  +  AR G      ++   E++                   E    +TE +N +
Sbjct: 421 SHAATGADDEARAGDRVVGEAIGQIERL------------------AEDMHRSTEAMNLL 462

Query: 454 ANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAA 513
              ++ S++I  ++D I +V+ QT +LA+N A+EAARAGE G+GFAVV+ +++ LA    
Sbjct: 463 ---QQESQKIGSVMDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQ 519

Query: 514 ENAEQIKDQVKNIQ---EQINIVRKDLADILSTVMEEAQKAALTIKQL----DNVRSRMS 566
           ++ E+I++ + ++Q   +Q+    +    +  + +E A+KA  +++ +     +++S   
Sbjct: 520 KSTEEIEELIASLQHGTQQVANAMQGSRALTDSSVELARKAGSSLESITSTVSSIQSMNQ 579

Query: 567 DVVLGSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSE 623
            +   +++ S  A  I RSI + R   +Q A A++E++ ++ E A    Q  +  S+
Sbjct: 580 QIAAAAEQQSAVAEEISRSILNVRDVSEQTAAASDETAASSVELARLGGQLQTLVSQ 636



 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 14/226 (6%)

Query: 425 IEENKTTVDEMILAITESTKAATENL-----NEMANIERISRQI-------DKIVDGISN 472
           I EN +  ++  L   ++  A T+NL     +E A +++    +        +  D ++N
Sbjct: 190 IAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVAN 249

Query: 473 VSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINI 532
           ++   A + V GA    R+    +   +   DI++    + +    +   +  +   + I
Sbjct: 250 ITTSRAEMTVQGADIVKRSDALYQ-IQLERRDIESTQARSLQAIATLLALLVGVLAAVLI 308

Query: 533 VRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAG 592
            R+    +  T++   + A+  + Q   V +R  ++ +  + I+     +   I+  R G
Sbjct: 309 TRQITRPLQDTLVAVEKIASGDLTQHMRV-TRRDELGVLQQGIARMGTTLRELISGIRDG 367

Query: 593 MQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
           + QIA+AAEE S  T + +  A  Q   T ++A+A+  +AA   E+
Sbjct: 368 VTQIASAAEELSAVTEQTSAGANSQKVETDQVATAMHEMAATVQEV 413



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 520 KDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESA 579
           +D++  +Q+ I  +   L +++S + +   + A   ++L  V  + S    G+       
Sbjct: 340 RDELGVLQQGIARMGTTLRELISGIRDGVTQIASAAEELSAVTEQTS---AGANSQKVET 396

Query: 580 GGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIA 632
             +  ++ +  A +Q++A  AE++SHA   A   AR       E    IE +A
Sbjct: 397 DQVATAMHEMAATVQEVARNAEQASHAATGADDEARAGDRVVGEAIGQIERLA 449