Pairwise Alignments

Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 1e-26
 Identities = 74/294 (25%), Positives = 153/294 (52%), Gaps = 21/294 (7%)

Query: 38  ARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAV 97
           A  +A+ Q+++ +V ++  E+ A  ++  +  T+  ++  +I   + E ++ ++     +
Sbjct: 259 ANLVAQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEIGATSREIAATSRDLVRTM 318

Query: 98  SQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELS 157
           +++    ++ ++ A   +Q L ++E           E +  V  +++  N    ++  L+
Sbjct: 319 TEVTTAADQASSLAGSGQQGLARME-----------ETMHQVMGAADLVN---AKLGILN 364

Query: 158 EQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAA 217
           E+A+ I   V  ++ +ADQTNLL+LNAAIEA +AG++G+GFAVVA  VR LA++      
Sbjct: 365 EKASNITQMVVTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATY 424

Query: 218 NIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLK 277
           +IE ++++I +    VS GV    + +E EV++G    +Q   +  ++  ++   + L  
Sbjct: 425 DIEQMVREIQSA---VSAGVMGMDKFSE-EVRRGMFEVQQ---VGEQLSQIIHQVQALAP 477

Query: 278 AADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSL 331
               ++        G+E ++QA  + S A  ++++SL Q   A+D     A  L
Sbjct: 478 RVLMVNEGMQAQATGAEQINQALAQLSDASTQTVESLRQASYAIDELSQVAAGL 531



 Score = 93.2 bits (230), Expect = 3e-23
 Identities = 130/607 (21%), Positives = 250/607 (41%), Gaps = 92/607 (15%)

Query: 44  KQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNF 103
           +Q+     A   A +L  +  + S +  + ++ E  AVG +        S    + ++++
Sbjct: 7   RQRILASFAVIIAIMLLMIVAAYSRLVTIETAEE--AVGTDSIPGVYYSSMIRSAWVDSY 64

Query: 104 INEQATYATQSKQILTKLEQDIV-DVANKINEMVSNVQTSSERQNDSVK--RMIELSEQA 160
           +  Q      + + +T  + ++     N++ + +++ Q + + ++D  +    ++L E  
Sbjct: 65  VTSQQLVGLSNHREITSADLELFRSFDNRLKQYMASYQATIQDKDDQARFDSFVQLEESY 124

Query: 161 AKINDAVKQVIHIADQTNLLALNAAIEA--GRAGKHGKGFAVVADTVRTLAEKAEKNAAN 218
            KI   V QV+    Q N       I      A K G+           L E  E N A+
Sbjct: 125 LKI---VNQVLDAYGQRNYDEAQRLITEVLTPAWKDGR---------EHLNEVIENNRAS 172

Query: 219 IESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKA 278
            ++   DI N      N  K S            VV+  L ++   +  L+     LL+A
Sbjct: 173 ADAATNDIVNAV----NTAKGSM-----------VVSLLLAIVAAGICGLL-----LLRA 212

Query: 279 ADEMSSAAVIALKGSES------VSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLD 332
                   V AL    S      +S   +++  A E     + +   AL   V  AQ   
Sbjct: 213 ITAPMQRIVHALDKLRSGDLSMRLSLDRKDEFGAIESGFNEMAE---ALANLVAQAQ--- 266

Query: 333 ELTDELRTSTDIVKSSEEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVET 392
                 R+S  +  S  E+AA +++  A   E   ++ EI     +I++ ++ + +++  
Sbjct: 267 ------RSSVQVTTSVTEIAATSKQQQATATETAATTTEIGATSREIAATSRDLVRTMTE 320

Query: 393 GITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNE 452
             T+  Q    A  G++              G+   + T+ + ++   +   A    LNE
Sbjct: 321 VTTAADQASSLAGSGQQ--------------GLARMEETMHQ-VMGAADLVNAKLGILNE 365

Query: 453 MANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDA 512
            A+       I ++V  I  V+ QT +L++N A+EA +AGEYG+GFAVV+T+++ LA+  
Sbjct: 366 KAS------NITQMVVTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQT 419

Query: 513 AENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGS 572
           A     I+  V+ IQ  ++         +    EE ++    ++Q   V  ++S ++   
Sbjct: 420 AVATYDIEQMVREIQSAVSAGVMG----MDKFSEEVRRGMFEVQQ---VGEQLSQII--- 469

Query: 573 KRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIA 632
                    +   +     GMQ  AT AE+ + A  + + A+ Q   S  + + AI+ ++
Sbjct: 470 ----HQVQALAPRVLMVNEGMQAQATGAEQINQALAQLSDASTQTVESLRQASYAIDELS 525

Query: 633 AVADELQ 639
            VA  L+
Sbjct: 526 QVAAGLR 532