Pairwise Alignments
Query, 641 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 541 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25
Score = 124 bits (311), Expect = 1e-32
Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 18/298 (6%)
Query: 26 APKKEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEE 85
A K D LR TL R +A ++ASA EL A +ES+ +TQ + +EQ A
Sbjct: 251 AMAKMQDKLRD---TLQRIAGSASQLASAAEELNAVTDESARGLTQQNNEIEQAA----- 302
Query: 86 SSSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSER 145
TAV++M + + E A A + + D + + E VS ++ S
Sbjct: 303 ---------TAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGD 353
Query: 146 QNDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTV 205
+ + +L+ ++ I + + +ADQTNLLALNAAIEA RAG+ G+GFAVVAD V
Sbjct: 354 VQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEV 413
Query: 206 RTLAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIRNEM 265
R LA + +++ + IE +I I G E + +++S+++AES + L I +
Sbjct: 414 RALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAI 473
Query: 266 VDLVKDSEVLLKAADEMSSAAVIALKGSESVSQ-AAQEQSAACEESLKSLDQQQIALD 322
V++ + + V+ AA+E + A + ++ + Q + A + S S + ++A+D
Sbjct: 474 VEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVD 531
Score = 95.5 bits (236), Expect = 5e-24
Identities = 81/320 (25%), Positives = 156/320 (48%), Gaps = 25/320 (7%)
Query: 306 ACEESLKSLDQQQIALDGAVTAAQ---SLDELTDELR-TSTDIVKSSEEVAAAAEELSAG 361
A EE + + I +DG A + ++ ++ D+LR T I S+ ++A+AAEEL+A
Sbjct: 224 AAEEVAEGNLTRPIKVDGNDEAGRLLAAMAKMQDKLRDTLQRIAGSASQLASAAEELNAV 283
Query: 362 IEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGKERAESSLKACEKM 421
+E R + + Q ++ M +VE + AR A S+ +A
Sbjct: 284 TDESARGLTQQNNEIEQAATAVNEMTSAVE----------EVAR----NAVSTSEASRNA 329
Query: 422 LTGIEENKTTVDEMILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLA 481
T + + V E + AI + + ++ SR I K++D I ++ QT +LA
Sbjct: 330 TTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLADQTNLLA 389
Query: 482 VNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQ---EQINIVRKDLA 538
+N A+EAARAGE G+GFAVV+ +++ LA+ ++ +I+ + +IQ E ++
Sbjct: 390 LNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNST 449
Query: 539 DILSTVMEEAQKAALTIKQLD----NVRSRMSDVVLGSKRISESAGGIERSIADARAGMQ 594
+ + + A+ A +++ ++ + R + ++ ++ A ++R++ + R
Sbjct: 450 ERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSV 509
Query: 595 QIATAAEESSHATGEAATAA 614
Q AT A ++S A+ E + A
Sbjct: 510 QSATGASQTSAASSELSRLA 529
Score = 38.9 bits (89), Expect = 6e-07
Identities = 74/338 (21%), Positives = 130/338 (38%), Gaps = 45/338 (13%)
Query: 305 AACEESLKSLDQQQIALD---GAVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSAG 361
AA + ++ DQ +A D G + A +L L L T + + S + AA E
Sbjct: 173 AALATNQQAEDQYNMAFDWVIGLLIIATALTMLFAWLLTRSITLPISLALEAAEEVAEGN 232
Query: 362 IEE-INRSSNEIMGALNQISSGAQHMAKSVETGIT-SLTQIEQGARLGKERAESSLKACE 419
+ I N+ G L + Q + I S +Q+ A + S +
Sbjct: 233 LTRPIKVDGNDEAGRLLAAMAKMQDKLRDTLQRIAGSASQLASAAEELNAVTDESARGLT 292
Query: 420 KMLTGIEENKTTVDEMILAITE------STKAATENLNEMANIERISRQIDKIVDGISNV 473
+ IE+ T V+EM A+ E ST A+ N A R D + + +S
Sbjct: 293 QQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGR-----DLVQETVS-- 345
Query: 474 SIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIV 533
A+ ++G V+A +T I +LAN++ + + + D ++ + +Q N++
Sbjct: 346 ----AIERMSGDVQAT------------ATLIGDLANESRDIGK-VLDVIRGLADQTNLL 388
Query: 534 RKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGM 593
+ A + E + A+ D VR+ + R +S IER I +AG
Sbjct: 389 ALNAAIEAARAGEAGRGFAVVA---DEVRAL-------AHRTQQSTSEIERMIGSIQAGT 438
Query: 594 QQIATAAEESSHATGEAATAARQQSSSTSELASAIENI 631
+ + S+ A+ S + +AI I
Sbjct: 439 EHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEI 476
Score = 32.3 bits (72), Expect = 6e-05
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 595 QIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
Q+A+AAEE + T E+A QQ++ + A+A+ + + +E+
Sbjct: 272 QLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEV 315