Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 173 a.a., Positive regulator of CheA protein activity (CheW) from Variovorax sp. SCN45

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 52/148 (35%), Positives = 91/148 (61%), Gaps = 2/148 (1%)

Query: 369 MQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRF 428
           +++V FKL +EE+GI I  VQE+ R  + ++R+    ++I+GV+NLRG ++PI+DMR +F
Sbjct: 25  LEVVTFKLGEEEYGIDIQKVQEL-RGYDAVTRIANAPEYIKGVVNLRGIIVPIIDMRIKF 83

Query: 429 HLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPVL-SEEQAQLMRQMV 487
            L +    +   ++V+N      G +VDSVS+V+ +   Q++ AP + S   A  +  + 
Sbjct: 84  KLGDPTYDQFTVVIVLNIGGRVVGMVVDSVSDVITLSAEQIKPAPEMGSVLDADYLIGLG 143

Query: 488 NLSPRMIGVLSADQLISNTEMYKLHMAA 515
            L  RM+ ++  D+L+S+ EM  +  AA
Sbjct: 144 TLDDRMLILVDIDRLMSSQEMGLIEAAA 171



 Score = 69.7 bits (169), Expect = 8e-17
 Identities = 39/136 (28%), Positives = 71/136 (52%)

Query: 19  QYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTLLCM 78
           + V F LG+E + + +Q+V+E+        +   P Y+ G+ NLRG I+P++ +R    +
Sbjct: 26  EVVTFKLGEEEYGIDIQKVQELRGYDAVTRIANAPEYIKGVVNLRGIIVPIIDMRIKFKL 85

Query: 79  DRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDPTLITNTIHS 138
              +  + T VIV+ IG   +G  VD V +V T   E IKP    G  +D   +      
Sbjct: 86  GDPTYDQFTVVIVLNIGGRVVGMVVDSVSDVITLSAEQIKPAPEMGSVLDADYLIGLGTL 145

Query: 139 DNQIIQVLNCHRLLDN 154
           D++++ +++  RL+ +
Sbjct: 146 DDRMLILVDIDRLMSS 161



 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 9/146 (6%)

Query: 192 QLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFG 251
           ++V   +  +EY   ++  QE+ R  + +T++      I GV+NLRG  +P++ +R  F 
Sbjct: 26  EVVTFKLGEEEYGIDIQKVQEL-RGYDAVTRIANAPEYIKGVVNLRGIIVPIIDMRIKFK 84

Query: 252 LPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKMGQAND 311
           L   ++     V+V+NI         VG+VVD+V +VI L  + +   PE M  +  A+ 
Sbjct: 85  LGDPTYDQFTVVIVLNIG-----GRVVGMVVDSVSDVITLSAEQIKPAPE-MGSVLDADY 138

Query: 312 ISAICNLDDGRRTLSVISVEQLFDAQ 337
           +  +  LDD  R L ++ +++L  +Q
Sbjct: 139 LIGLGTLDD--RMLILVDIDRLMSSQ 162