Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 181 a.a., Chemotaxis protein CheW from Methylophilus sp. DMC18

 Score = 72.8 bits (177), Expect = 9e-18
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 370 QLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRFH 429
           Q + F L +E F I+I  V+EII   + ++ VPK   FI GVINLRG V+P++DM  RF 
Sbjct: 23  QYLTFVLGREVFAINILNVKEIIEYGQ-LTEVPKMPAFIRGVINLRGAVVPVIDMAARFD 81

Query: 430 LPEMARHERQRILVVNFEKIS----TGFIVDSVSEVLRIPESQLEDAPVLSEE-QAQLMR 484
            P      +  I+++     +     G +VD+V+EV+ I    +E AP      +A  + 
Sbjct: 82  KPTAEITRKTCIVIIEVAHATGTQVVGMMVDAVNEVVDIEAGNIEPAPSFGANIRADFIA 141

Query: 485 QMVNLSPRMIGVLSADQLISNTEMYKL 511
            M  +  + I +L+ ++++S  E+  L
Sbjct: 142 GMGKIEGKFIILLNVNKVLSVDEVSSL 168



 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 3   SEALVDNELEHEEN-----LTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLI 57
           SE ++    +H+ N     + QY+ F+LG E+FA+++  V+EII       VP  P+++ 
Sbjct: 2   SELVIARGEQHQLNGFSDAMQQYLTFVLGREVFAINILNVKEIIEYGQLTEVPKMPAFIR 61

Query: 58  GLSNLRGQILPVLCLRTLLCMDRTSATEATRVIVITI----GKTKIGFTVDRVVNVATPD 113
           G+ NLRG ++PV+ +           T  T +++I +    G   +G  VD V  V   +
Sbjct: 62  GVINLRGAVVPVIDMAARFDKPTAEITRKTCIVIIEVAHATGTQVVGMMVDAVNEVVDIE 121

Query: 114 PEMIKPTNTAGGKIDPTLITNTIHSDNQIIQVLNCHRLLDNSVEEELELST 164
              I+P  + G  I    I      + + I +LN +++L  SV+E   L+T
Sbjct: 122 AGNIEPAPSFGANIRADFIAGMGKIEGKFIILLNVNKVL--SVDEVSSLAT 170



 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 28/111 (25%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 190 MRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTL 249
           M+Q +  ++  + +A  + + +EI+   ++ T+VP   + I GVINLRG  +P++ +   
Sbjct: 21  MQQYLTFVLGREVFAINILNVKEIIEYGQL-TEVPKMPAFIRGVINLRGAVVPVIDMAAR 79

Query: 250 FGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVP 300
           F  P+   +    ++++ ++ +   ++ VG++VDAV EV+ +    ++  P
Sbjct: 80  FDKPTAEITRKTCIVIIEVAHATGTQV-VGMMVDAVNEVVDIEAGNIEPAP 129