Pairwise Alignments

Query, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 167 a.a., Positive regulator of CheA protein activity (CheW) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 89.4 bits (220), Expect = 9e-23
 Identities = 53/165 (32%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 353 MSTIDDVSILEDDNTDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVI 412
           M+ + +VS L  + +  + ++F L  EE+GI I  VQEI R  + ++R+  T  FI+GV 
Sbjct: 1   MTGMSNVSKLAGEPSGQEFLVFTLGNEEYGIDILKVQEI-RGYDQVTRIANTPAFIKGVT 59

Query: 413 NLRGNVLPIVDMRKRFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDA 472
           NLRG ++PIVD+R +F   ++   +   ++V+N  +   G +VD VS+VL +   Q+  A
Sbjct: 60  NLRGVIVPIVDLRVKFCEGDVEYDDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPA 119

Query: 473 PVLSEE-QAQLMRQMVNLSPRMIGVLSADQLISNTEMYKLHMAAN 516
           P  +     + +  +  L  RM+ +++ ++L+++ EM  L +AA+
Sbjct: 120 PEFAVTLSTEYLTGLGALGERMLILVNIEKLLNSEEMALLDIAAS 164



 Score = 67.4 bits (163), Expect = 4e-16
 Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 9   NELEHEENLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILP 68
           ++L  E +  +++ F LG+E + + + +V+EI        +  TP+++ G++NLRG I+P
Sbjct: 8   SKLAGEPSGQEFLVFTLGNEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVP 67

Query: 69  VLCLRTLLCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKID 128
           ++ LR   C       + T VIV+ +G+  +G  VD V +V +   E I+P       + 
Sbjct: 68  IVDLRVKFCEGDVEYDDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAPEFAVTLS 127

Query: 129 PTLITNTIHSDNQIIQVLNCHRLLDNSVEEELELSTQRFNHLS 171
              +T       +++ ++N  +LL++   EE+ L     +H++
Sbjct: 128 TEYLTGLGALGERMLILVNIEKLLNS---EEMALLDIAASHVA 167



 Score = 56.6 bits (135), Expect = 6e-13
 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 13/139 (9%)

Query: 201 QEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRTLFGLPSISFSDS 260
           +EY   +   QEI R  + +T++  T + I GV NLRG  +P+V LR  F    + + D+
Sbjct: 27  EEYGIDILKVQEI-RGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCEGDVEYDDN 85

Query: 261 HRVLVVNISLSEKERLPVGVVVDAVREVIRLHVDVMDSVPEIMSKMG--QANDISAICNL 318
             V+V+N+      +  VG+VVD V +V+ L  + +   PE    +       + A+   
Sbjct: 86  TVVIVLNLG-----QRVVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGAL--- 137

Query: 319 DDGRRTLSVISVEQLFDAQ 337
             G R L ++++E+L +++
Sbjct: 138 --GERMLILVNIEKLLNSE 154