Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 890 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  257 bits (656), Expect = 2e-72
 Identities = 133/398 (33%), Positives = 235/398 (59%), Gaps = 15/398 (3%)

Query: 370 KTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGVRKLAQDIKAEQSVISRLAED 429
           ++++V    ++ LM +V EL++ +N +  +A R +          + K     +S +  +
Sbjct: 210 QSIRVHVGVLEQLMTMVSELVLTRNQLMEIARRHDEP--------EYKVSLQRLSNVTGE 261

Query: 430 LQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVH 489
           LQ  VM+ RM P+   +Q+ PR++RD++++LGKQ++L   G DTE D+ +++ + +PL H
Sbjct: 262 LQEAVMRTRMQPIGNAWQKLPRIVRDLAQELGKQIELEQVGADTELDRQVLDQIKDPLTH 321

Query: 490 LIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKALE 549
           ++RN+ DHG+E P+ RR  GK+  G I LSA+     VI+++SDDG+G+DV R+K KALE
Sbjct: 322 MVRNSADHGLEMPEQRRAAGKSERGLIRLSAYHEGGHVIVEISDDGRGLDVARIKQKALE 381

Query: 550 RGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSS 609
            GL   ++L +M   ++   IF  GFST ++V+++SGRGVGMD VR+ +E  GGT+ + S
Sbjct: 382 NGLATEAELAKMPDSQVFRFIFHAGFSTAQKVTNVSGRGVGMDVVRSNLESIGGTVDVRS 441

Query: 610 EPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKD--IRRVKNLDT 667
             G+GS   + +PL++ I   ++     + FA+P  +V + +++    D  I  + N   
Sbjct: 442 RQGEGSTFVIKIPLTLAIVPALIVRAAGERFALPQSAVEELVRVQAGSDHEITWLNNSPV 501

Query: 668 FILRGETVPILYLKRAFEMNSAQIYPD-----IQPILVVRVGDDVLGLAVDRLQEGQDVI 722
             LR   +PI+ L     ++  +   D        I+V++VG    G+ V+ +   ++++
Sbjct: 502 LGLRDRLLPIVSLGALLGLSPERDGRDEALWERALIVVMKVGHQTFGVVVEAVSHTEEIV 561

Query: 723 IKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKHA 760
           +KP+  AL    +  G+ I+GDGRV+++LD   + +HA
Sbjct: 562 VKPMASALRQLPMVSGSTILGDGRVIMILDPAGLAQHA 599



 Score = 62.8 bits (151), Expect = 8e-14
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query: 1   MNPIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFT 60
           M+ +++ F+ E+ + ++ A   L+  E +P++  I+N +FR +HT+KG  G +  +    
Sbjct: 1   MDDLLREFLTETSESLDVADVELVKFEQDPNNAQILNNIFRLVHTIKGTCGFI-GLPRLA 59

Query: 61  QLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMI 120
            LAH  E LM + R+G   +    + L+L   D+  L ++ +E+ +   +E     + +I
Sbjct: 60  SLAHAAETLMDRFREGR-PVTTDAVGLVLSTIDRIKLLLQHVEETE--GSEPEGEDRDLI 116

Query: 121 AQLAPLTQA--APTHTPTPAVAAQ 142
           + L  + +A  AP   P PA   Q
Sbjct: 117 SLLEAMAEAVDAPAAPPPPAPPPQ 140