Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  202 bits (515), Expect = 1e-55
 Identities = 107/344 (31%), Positives = 201/344 (58%), Gaps = 9/344 (2%)

Query: 413  AQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGED 472
            A D+  +Q+   R+  +LQ  +M+ RMVP   +  R  R++R ++ +LGK V+ I+   +
Sbjct: 1443 AHDLLQQQA---RINTELQEGLMRTRMVPFERMLPRLKRIVRQVAEELGKDVEFIVGNAE 1499

Query: 473  TEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMS 532
             E D++++E ++ PL H++RNA+DHG+ES D R   GK   G+ITL        ++  M 
Sbjct: 1500 GEMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLDLTHEGGDIVFDMR 1559

Query: 533  DDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMD 592
            DDG GV +E V+ KA++RGL++ +  + +S ++++  I +PGFST E+++ +SGRGVGMD
Sbjct: 1560 DDGAGVPLEAVRRKAIKRGLLDPN--QDISDRDVLQFILQPGFSTAEKITQISGRGVGMD 1617

Query: 593  AVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLK 652
             V   + + GG++ + S PG+G    + LP +++++R +M +     +AIP+ ++   ++
Sbjct: 1618 VVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEGLVR 1677

Query: 653  ISRHKDIRRV-KNLDTFILRGETVPILYLKRAFE-MNSAQIYPDIQ--PILVVRVGDDVL 708
            +  H+      ++   +   G+   + YL      ++  ++    Q  P+L+V+  +  +
Sbjct: 1678 VLPHELAGHYQQDPPRYEYAGQRYELFYLGDLLHTVSRPKLLGHYQPVPVLLVQCNERRV 1737

Query: 709  GLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLD 752
             + VD +   +++++K L    A      GA I+GDGRV+L++D
Sbjct: 1738 AIHVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIID 1781



 Score = 65.9 bits (159), Expect = 2e-14
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 11/158 (6%)

Query: 4    IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
            I++ F+ E+ D+++SA + L      PD+ A ++ L R++HT+KG + + + I     LA
Sbjct: 1045 IVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAE-IEAIGDLA 1103

Query: 64   HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
            H +E L + + D   +    +  +++   ++  L +EEL  HQ LS  A     ++IA++
Sbjct: 1104 HELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDSA-----ELIARV 1158

Query: 124  APLTQ----AAPTHTPTPAVAAQEETATLSISELTELL 157
              L Q    AAP   P PA  A  E   + + E  ++L
Sbjct: 1159 RALRQGSAPAAPAAAP-PASGADPELLDIFLEEAADIL 1195



 Score = 55.1 bits (131), Expect = 4e-11
 Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 4    IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
            ++  F+ E+ D+++S++  L   +A P ++  +  L R++HT+KG + +++ IAP   LA
Sbjct: 1183 LLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLRDLHTLKGGARMVE-IAPIGDLA 1241

Query: 64   HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIE 100
            H +E L + +  G +A +  +  L+ GC D+    I+
Sbjct: 1242 HELEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMID 1278



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 8   FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHRME 67
           F+ E+ +++E   R L     N  DK    E+ R  HT+KG SG +       +LA  +E
Sbjct: 624 FLEETDEVLEVLHRNL----PNSADKIAQGEMRRAFHTLKG-SGRMVRALVLAELAWAVE 678

Query: 68  DLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEEL-------EQHQELSAEAVSISKQMI 120
           +L+ +V +  V L   +  ++    D+ +  + EL       +Q Q    +A++     +
Sbjct: 679 NLLNRVLERSVTLGPDVQQVL----DEAVALLPELIADFAIDDQRQRDEVDALAARAHAL 734

Query: 121 AQLAPLTQAAPTHTP 135
           A   P+  A P H P
Sbjct: 735 ASGMPVPAAEP-HDP 748



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 35  IINELFREIHTVKGASGILDNIAPFTQLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQ 94
           + +EL R +HT+KG S  +  + P  +LA  ++ L ++ +   + L+   ++L+L     
Sbjct: 780 VSDELQRALHTLKG-SAYMAGVLPIAELARPLDHLTREYKAHRLPLDLDEVELLLEAEGL 838

Query: 95  FLLWIEELE 103
           F   + +L+
Sbjct: 839 FQRGLRDLD 847