Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 735 a.a., chemotaxis protein CheA from Pseudomonas simiae WCS417

 Score =  276 bits (705), Expect = 4e-78
 Identities = 153/416 (36%), Positives = 253/416 (60%), Gaps = 24/416 (5%)

Query: 349 PAQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFG 408
           PA+ +A  V    DK   +   T++VD  ++D +M++VGEL++ +N +  L   + +E  
Sbjct: 331 PARAAAAPV---ADKPASEAETTVRVDTARLDDIMNMVGELVLVRNRLVRLGLSSGDE-- 385

Query: 409 VRKLAQDIKAEQSVISRL---AEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVD 465
                    A Q  +S L     DLQ+ VM+ RM P+  VF R+PRL+RD++R+L K+++
Sbjct: 386 ---------AMQKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEIN 436

Query: 466 LIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDD 525
           L + GE+T+ DK++VE L++PLVHL+RNA+DHG+E+P+ R   GK+  GK+ L+A    D
Sbjct: 437 LELVGEETDLDKNLVEALADPLVHLVRNAVDHGVETPEEREASGKSRNGKVILAAEQEGD 496

Query: 526 SVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLS 585
            +++ ++DDGKG+D   ++  A++RG+++    +R++  E  +LIF PGFST  ++SD+S
Sbjct: 497 HILLSITDDGKGMDPAILRNIAVKRGVMDKDAADRLTDSECYNLIFAPGFSTKTEISDVS 556

Query: 586 GRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIE 645
           GRGVGMD V+T I +  G++ + S  G+GS+I + +PL++ I   +M  L  Q+FA P+ 
Sbjct: 557 GRGVGMDVVKTKISQLNGSINIYSTKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLV 616

Query: 646 SVIQTLKISRHKDIRRVKNLD---TFILRGETVPILYLKRAFEMNSAQIYPDIQPILVVR 702
           +V +      H D+ R   +D     I+R + +P+ YLKR    ++         ++++ 
Sbjct: 617 NVNEIF----HLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVASAKHEEQREGHVVILS 672

Query: 703 VGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVK 758
           VG   +G  VD+L   ++V+IKPL   L       GA I GDGR+ L+LD   ++K
Sbjct: 673 VGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLK 728



 Score = 69.3 bits (168), Expect = 7e-16
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I+Q+F++E+ +++E  +  L+ LE+ PDD  ++N +FR  HTVKG +G L  +    +  
Sbjct: 9   ILQDFLVEAGEILEQLSEQLVELESRPDDANLLNAIFRGFHTVKGGAGFL-QLHELVECC 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
           H  E++   +R G   ++  ++D++L   D       E+ +   ++A     + +++A L
Sbjct: 68  HIAENVFDILRKGERHVDSELMDVILEALDAVNGMFSEVRERAPITA----ATPELLAAL 123

Query: 124 APLTQAAPTHTPTPAVAAQEETA----TLSISELTELLGRDCFNDVEALLEHPDALLLIY 179
           A   + A       A AA E  A     ++ SE  +LL  +  + V+A  E P A +   
Sbjct: 124 ARYAEPADLSAAPVAEAAPEPVAEAEPDVTDSEFEQLL--NSLSAVKAEAEAPAAAVAAP 181

Query: 180 TPD 182
           T +
Sbjct: 182 TSE 184