Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., Sensor histidine kinase RcsC from Pseudomonas sp. DMC3

 Score =  209 bits (533), Expect = 3e-58
 Identities = 111/335 (33%), Positives = 200/335 (59%), Gaps = 1/335 (0%)

Query: 424 SRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDL 483
           S+ A+ L    +  RM P A V     R++RD+ R LGKQV L IEGE T+ D+ ++E L
Sbjct: 273 SQRAQVLYDTALACRMRPFADVLSGQARMVRDLGRSLGKQVRLEIEGEKTQVDRDVLEKL 332

Query: 484 SEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERV 543
             PL HL+RNA+DHGIESP+ R  +GK   G I L A      +++++SDDG GVD+E+V
Sbjct: 333 EAPLTHLLRNAVDHGIESPEQRLLKGKPEEGLIRLRASHQAGLLVLELSDDGNGVDLEKV 392

Query: 544 KTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGG 603
           +   +ER L  A    ++S++E++  +F PGFS  ++V+++SGRGVG+DAV+  + +  G
Sbjct: 393 RRSIVERQLSPAETAAQLSEEELLTFLFLPGFSLRDKVTEVSGRGVGLDAVQHMVRQLRG 452

Query: 604 TLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVK 663
            + L    G+GS   + +PL++++ R ++ E+ ++++A P+  + +   ++  +DI +V+
Sbjct: 453 AVVLEQTAGEGSRFHLEVPLTLSVVRSLVVEVGEEAYAFPLAHIERMCDLA-PEDIVQVE 511

Query: 664 NLDTFILRGETVPILYLKRAFEMNSAQIYPDIQPILVVRVGDDVLGLAVDRLQEGQDVII 723
               F   G+ V ++   +     ++Q       ++V+R  + + G+AV+R    + +++
Sbjct: 512 GRQHFWHEGQHVGLVAASQLLNRPASQNDGATLKVVVIREREAIYGVAVERFVGERTLVV 571

Query: 724 KPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVK 758
            PL+  L         A++ DG V+L++D E++++
Sbjct: 572 LPLDERLGKVQDISAGALLDDGSVVLIVDVEDMLR 606



 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           +++ F +E+    +  + GLLALE NP     +    R  H++KGA+ I+  I     +A
Sbjct: 11  LLELFSLEAEAQTQVLSAGLLALERNPTQADQLESCMRAAHSLKGAARIV-GIDSGVSVA 69

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEA-VSISKQMIAQ 122
           H MED +   ++G + L    +D +L   D  +         Q    EA V++  +++  
Sbjct: 70  HVMEDCLVSAQEGRLLLRPEHIDALLQGTDLLMRIATPANAPQPADIEAYVALMGRLLDP 129

Query: 123 LAPLTQAAPTHTPTPAVAAQEETAT 147
            AP   AA   TPT A    E   T
Sbjct: 130 SAP---AAVVATPTMAELQIEPAPT 151